Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_G10
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...   261   6e-71
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...   261   6e-71
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    41   1e-04
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ...    27   1.4  
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    25   5.6  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   7.3  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   7.3  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.7  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   9.7  
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    25   9.7  

>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score =  261 bits (639), Expect = 6e-71
 Identities = 130/181 (71%), Positives = 153/181 (84%)
 Frame = +3

Query: 6   RLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLM 185
           +LF ++    V+V D+SL DYI++     + LPH+AGR+  KRFRKA+C IVERLTNSLM
Sbjct: 19  KLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRFRKARCFIVERLTNSLM 76

Query: 186 MHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQ 365
           M+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+   GPREDSTRIG AGTVRRQ
Sbjct: 77  MNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQ 136

Query: 366 AVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKTDELE 545
           AVDVSPLRRVNQA+ L+  GAREAAFRN+K+I+EC+A+E+INAAKGSSNSYAIKK DELE
Sbjct: 137 AVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELE 196

Query: 546 R 548
           R
Sbjct: 197 R 197


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score =  261 bits (639), Expect = 6e-71
 Identities = 130/181 (71%), Positives = 153/181 (84%)
 Frame = +3

Query: 6   RLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLM 185
           +LF ++    V+V D+SL DYI++     + LPH+AGR+  KRFRKA+C IVERLTNSLM
Sbjct: 19  KLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRFRKARCFIVERLTNSLM 76

Query: 186 MHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQ 365
           M+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+   GPREDSTRIG AGTVRRQ
Sbjct: 77  MNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQ 136

Query: 366 AVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKTDELE 545
           AVDVSPLRRVNQA+ L+  GAREAAFRN+K+I+EC+A+E+INAAKGSSNSYAIKK DELE
Sbjct: 137 AVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELE 196

Query: 546 R 548
           R
Sbjct: 197 R 197


>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 1/131 (0%)
 Frame = +3

Query: 159 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRI 338
           V+ L N +M     +GKK  A +IV  A  II   TGENP+ VL  AI    P       
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISPLMKLVSA 181

Query: 339 GRAGTVRRQAVDVSPLRRVNQAI-WLLCTGAREAAFRNIKTIAECVADELINAAKGSSNS 515
            R        + +   +R   A+ W+L     E    + K +++ +  E+I     +SN 
Sbjct: 182 KRFNKSVEFPMPLKERQRRRIALQWIL----GECKSSSPKRLSDRIVKEIIAIRSKTSNC 237

Query: 516 YAIKKTDELER 548
           +  KK D L R
Sbjct: 238 F--KKKDHLHR 246


>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 335

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +3

Query: 240 AFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRR 392
           + +I HL+TG N   +  T ++N   R D  R+ R+  +  Q+ D SP +R
Sbjct: 159 SLDIHHLVTGHNADDIAETILMNL-LRGDVARLPRSTEITTQS-DSSPTKR 207


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 33  DVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 125
           ++++++  +   I+V+EKYAK  P    R A
Sbjct: 20  ELEIAENEMPGLIAVREKYAKSQPLKGARIA 50


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 117 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIH 257
           +Y  KR   A+  +V R       H R N  KL +  +  H F ++H
Sbjct: 390 KYPRKRQEIAE--LVIRCLQDRSSHVRRNAIKLFSKLLTTHPFSVMH 434


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 98  IFCILLFYRNIILQRHVRYLN 36
           I C+L+  RNI L+  + YLN
Sbjct: 487 IICLLMQNRNISLKSQISYLN 507


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 379  PHYVVLTRLSGYCAQEH 429
            PH+ V+TR+  YC   H
Sbjct: 1435 PHWQVITRIPQYCHDTH 1451


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 246  EIIHLLTGENPLQVLVTAIINSGPREDSTR 335
            EI  +LTGENP ++   AI+    R  + R
Sbjct: 1034 EIFLMLTGENPEELQADAIVPVNVRRVTNR 1063


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = -1

Query: 463 AIVLMFLNAASRAPVHNNQIAWLTRRNGDTSTA*RRTVPARPILVESSLGPELIIAVTRT 284
           A +L  + ++ R+  H  ++  L   N  T++  +R +PA   +   S+  +L      +
Sbjct: 391 AKLLDLVKSSYRSSFHTKKMTSLFTHNNHTTSNIQREIPASDSIAWHSISKKLGTKSPES 450

Query: 283 CR 278
           CR
Sbjct: 451 CR 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,740
Number of Sequences: 5004
Number of extensions: 50002
Number of successful extensions: 136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)