Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_G10
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 307 3e-84
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 303 4e-83
01_07_0219 + 42079095-42079399,42079584-42079728,42081695-420817... 31 0.46
07_03_0100 + 13389899-13390219,13390723-13390841,13391220-133913... 29 2.4
01_06_1495 + 37769982-37771496 29 2.4
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201... 27 7.5
07_03_0865 + 22130880-22130921,22131938-22132170,22132268-221323... 27 7.5
07_01_0705 - 5313315-5315219,5315858-5315860 27 9.9
02_05_0969 + 33165396-33165935,33166352-33166883,33166988-331672... 27 9.9
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 307 bits (754), Expect = 3e-84
Identities = 148/182 (81%), Positives = 165/182 (90%), Gaps = 1/182 (0%)
Frame = +3
Query: 6 RLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSL 182
+LF RWS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCPIVERLTNSL
Sbjct: 12 KLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTNSL 71
Query: 183 MMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRR 362
MMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V AIINSGPRED+TRIG AG VRR
Sbjct: 72 MMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVRR 131
Query: 363 QAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKTDEL 542
QAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAEC+ADELINAAKGSSNSYAIKK DE+
Sbjct: 132 QAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEI 191
Query: 543 ER 548
ER
Sbjct: 192 ER 193
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 303 bits (745), Expect = 4e-83
Identities = 146/182 (80%), Positives = 164/182 (90%), Gaps = 1/182 (0%)
Frame = +3
Query: 6 RLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSL 182
+LF WS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCP+VERLTNSL
Sbjct: 13 KLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNSL 72
Query: 183 MMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRR 362
MMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V AIINSGPRED+TRIG AG VRR
Sbjct: 73 MMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVRR 132
Query: 363 QAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKTDEL 542
QAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAEC+ADELINAAKGSSNSYAIKK DE+
Sbjct: 133 QAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEI 192
Query: 543 ER 548
ER
Sbjct: 193 ER 194
>01_07_0219 +
42079095-42079399,42079584-42079728,42081695-42081739,
42082150-42082265,42082913-42083012,42083103-42083138,
42083301-42083351,42083431-42083565
Length = 310
Score = 31.5 bits (68), Expect = 0.46
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 357 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNS 515
RR+AV + +RR+ A WL GAR A R A E++ +A G S
Sbjct: 9 RREAVRAAHVRRIEAAAWL---GARRATRREDAAARCAAAGEVVGSAAGVGRS 58
>07_03_0100 +
13389899-13390219,13390723-13390841,13391220-13391315,
13391481-13391553,13392055-13392123
Length = 225
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -1
Query: 445 LNAASRAPVHNNQIAWLTRRNGDTSTA*RRTVPARPILVESSLGPE 308
L+A+SR P ++I RR G + + RR+ P +P + PE
Sbjct: 49 LHASSRVPAARHRIVCPCRRRGGSPSLTRRSSPEKPGPFSQTRSPE 94
>01_06_1495 + 37769982-37771496
Length = 504
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 316 QEKTPPGSVVLVQFDVKPSMCPH-YVVLTRLSGYCAQEHVRLHL 444
+E PPGS V++Q + + + PH + L G+ ++R+H+
Sbjct: 240 RENLPPGSYVVLQLEKEEILAPHTHFCLICGKGFKRDANLRMHM 283
>07_03_1503 + 27017933-27018063,27019668-27019727,27019996-27020101,
27020254-27020325,27021008-27021061,27021707-27021856,
27022206-27022547,27022651-27024684,27024706-27024947,
27025658-27026235,27026329-27028183,27028533-27028851,
27028980-27029417
Length = 2126
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 159 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTG 269
+ L ++HG N ++++AV +K +I+HLL G
Sbjct: 1328 ISALVVGSVIHGVVNIERMVAVLKIKDGLDILHLLRG 1364
>07_03_0865 +
22130880-22130921,22131938-22132170,22132268-22132385,
22132474-22132656,22132859-22132960
Length = 225
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +2
Query: 35 RSSIGHVFAGLYFGKREVCKIFTTFCWQVRSQTIP*SSVPYCG 163
R+S+G GL FG+ V + TT Q S +IP VP G
Sbjct: 19 RASLGKPVKGLGFGRERVPRTATTITCQAAS-SIPADRVPDMG 60
>07_01_0705 - 5313315-5315219,5315858-5315860
Length = 635
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 347 STTDPGGVFSWTRINNSS 294
S T PGGV WTR+ NS+
Sbjct: 96 SYTSPGGVEVWTRVCNST 113
>02_05_0969 +
33165396-33165935,33166352-33166883,33166988-33167242,
33167515-33167606,33167745-33167942,33168049-33168240,
33168341-33168562,33168858-33169024,33169117-33169210,
33169308-33169364,33169459-33169587,33169681-33169752,
33170180-33170293,33170419-33170580,33170666-33170794,
33171057-33171158,33171266-33171342,33171470-33171592,
33171666-33172227
Length = 1272
Score = 27.1 bits (57), Expect = 9.9
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Frame = +3
Query: 252 IHLLTGENPLQVLVTAIINSGPRED-----STRIGRAGTVRRQAVDVSPLRRVNQAIWLL 416
+ L+ GE L V A + PRED +T A VR Q V +P+ A L
Sbjct: 22 LSLMDGEPDLAAAVLARLGGSPREDDQHLCATAAAMAQAVRDQGVAATPVAYFAAAAAAL 81
Query: 417 CTGAREAA 440
AR A
Sbjct: 82 APLARAGA 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,707,079
Number of Sequences: 37544
Number of extensions: 325272
Number of successful extensions: 777
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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