Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_G10
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical pr...   326   6e-90
Z98851-5|CAB11541.1|  596|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z98851-4|CAB11542.1|  607|Caenorhabditis elegans Hypothetical pr...    27   6.7  

>Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical
           protein T05E11.1 protein.
          Length = 210

 Score =  326 bits (801), Expect = 6e-90
 Identities = 156/180 (86%), Positives = 166/180 (92%)
 Frame = +3

Query: 9   LFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMM 188
           LFG+WS   V VSD+SL DYI VKEK AKYLPHSAGR+  +RFRKA CPIVERL NSLMM
Sbjct: 25  LFGKWSLQSVNVSDISLVDYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVERLANSLMM 84

Query: 189 HGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQA 368
           HGRNNGKKLM VRIVKHAFEII+LLTGENP+QVLV A+INSGPREDSTRIGRAGTVRRQA
Sbjct: 85  HGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINSGPREDSTRIGRAGTVRRQA 144

Query: 369 VDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKTDELER 548
           VDV+PLRRVNQAIWLLCTGAREAAFRN+KTIAEC+ADELINAAKGSSNSYAIKK DELER
Sbjct: 145 VDVAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKKKDELER 204


>Z98851-5|CAB11541.1|  596|Caenorhabditis elegans Hypothetical
           protein H12I19.5b protein.
          Length = 596

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -3

Query: 143 FTESFVSVPASRMW*IFCILLFYRNIILQRHVRYLNVITTP 21
           F + ++ +P  ++  I CI LF  N+IL  + R  +++T P
Sbjct: 341 FEKKYLRLPDRQITKI-CIFLFLTNVILLEYPRVEDILTAP 380


>Z98851-4|CAB11542.1|  607|Caenorhabditis elegans Hypothetical
           protein H12I19.5a protein.
          Length = 607

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -3

Query: 143 FTESFVSVPASRMW*IFCILLFYRNIILQRHVRYLNVITTP 21
           F + ++ +P  ++  I CI LF  N+IL  + R  +++T P
Sbjct: 341 FEKKYLRLPDRQITKI-CIFLFLTNVILLEYPRVEDILTAP 380


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,438,152
Number of Sequences: 27780
Number of extensions: 287645
Number of successful extensions: 751
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)