Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_G09
(556 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110487-1|CAB54424.1| 610|Caenorhabditis elegans Hypothetical ... 250 5e-67
Z75537-2|CAA99835.1| 622|Caenorhabditis elegans Hypothetical pr... 36 0.020
AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transport... 36 0.020
Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical pr... 34 0.060
U10414-9|AAA19072.1| 712|Caenorhabditis elegans Hypothetical pr... 34 0.060
AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transport... 34 0.060
AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical ... 32 0.24
Z92803-6|CAB07240.1| 215|Caenorhabditis elegans Hypothetical pr... 32 0.32
Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical pr... 31 0.56
Z82059-12|CAB04880.1| 622|Caenorhabditis elegans Hypothetical p... 31 0.56
U20783-1|AAC46845.1| 535|Caenorhabditis elegans unknown protein. 31 0.56
AL032665-2|CAA21772.1| 622|Caenorhabditis elegans Hypothetical ... 31 0.56
AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal t... 31 0.56
AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal t... 31 0.56
AF490977-1|AAQ06435.1| 801|Caenorhabditis elegans ABC6 protein ... 31 0.56
Z70205-7|CAA94120.2| 996|Caenorhabditis elegans Hypothetical pr... 31 0.74
Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical pr... 31 0.74
Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical pr... 31 0.74
Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical pr... 31 0.74
U00043-12|AAC77504.2| 613|Caenorhabditis elegans Hypothetical p... 31 0.74
AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding c... 31 0.74
AB054992-1|BAB62002.1| 996|Caenorhabditis elegans peroxin protein. 31 0.74
Z67882-2|CAA91799.1| 1318|Caenorhabditis elegans Hypothetical pr... 30 1.3
AF357878-1|AAK27716.1| 589|Caenorhabditis elegans receptor-medi... 30 1.3
AF357877-1|AAK27715.1| 835|Caenorhabditis elegans receptor-medi... 30 1.3
AF357876-1|AAK27714.1| 576|Caenorhabditis elegans receptor-medi... 30 1.3
AC006695-15|AAO25981.1| 555|Caenorhabditis elegans Receptor med... 30 1.3
AC006695-14|AAK73902.2| 576|Caenorhabditis elegans Receptor med... 30 1.3
AC006695-13|AAF39978.1| 786|Caenorhabditis elegans Receptor med... 30 1.3
AC006695-12|AAL65796.1| 613|Caenorhabditis elegans Receptor med... 30 1.3
AC006695-11|AAF39979.1| 835|Caenorhabditis elegans Receptor med... 30 1.3
AC006695-10|AAF39980.1| 589|Caenorhabditis elegans Receptor med... 30 1.3
Z69635-6|CAA93461.1| 695|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical pr... 29 1.7
AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotei... 29 1.7
AL032646-1|CAA21676.1| 385|Caenorhabditis elegans Hypothetical ... 29 1.7
Z93782-3|CAB07855.1| 1294|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z83217-3|CAB05682.3| 610|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z81484-12|CAB03973.1| 1294|Caenorhabditis elegans Hypothetical p... 29 2.2
Z54271-5|CAA91035.2| 407|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z46934-12|CAA87044.3| 539|Caenorhabditis elegans Hypothetical p... 29 2.2
U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation... 29 2.2
AF292046-1|AAG41142.1| 407|Caenorhabditis elegans polynucleotid... 29 2.2
AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determini... 29 2.2
AF000264-2|AAC71121.1| 761|Caenorhabditis elegans Half transpor... 29 2.2
AC006670-5|AAF39912.2| 356|Caenorhabditis elegans Hypothetical ... 29 3.0
AC006670-4|AAU20843.1| 518|Caenorhabditis elegans Hypothetical ... 29 3.0
AL110490-11|CAB54452.1| 620|Caenorhabditis elegans Hypothetical... 28 3.9
Z92838-4|CAB07410.1| 1012|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical pr... 28 5.2
U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein. 28 5.2
U13645-7|AAA20989.2| 598|Caenorhabditis elegans Hypothetical pr... 28 5.2
AF003146-3|AAB54203.2| 252|Caenorhabditis elegans Abc transport... 28 5.2
Z70268-5|CAJ85767.2| 1204|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z70268-4|CAA94220.3| 1263|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z70268-3|CAA94219.3| 1263|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z66524-9|CAA91422.3| 696|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z66524-8|CAH10782.1| 753|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z66523-11|CAA91417.3| 696|Caenorhabditis elegans Hypothetical p... 27 6.9
Z66523-10|CAH04723.1| 753|Caenorhabditis elegans Hypothetical p... 27 6.9
L26987-1|AAA62312.1| 627|Caenorhabditis elegans par-2 protein. 27 6.9
AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical ... 27 6.9
AF106580-1|AAK73890.3| 582|Caenorhabditis elegans Abnormal embr... 27 6.9
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 27 6.9
U97014-3|AAB52427.3| 856|Caenorhabditis elegans Hypothetical pr... 27 9.1
U49956-7|AAL32232.1| 753|Caenorhabditis elegans Hypothetical pr... 27 9.1
U49956-6|ABD94087.1| 762|Caenorhabditis elegans Hypothetical pr... 27 9.1
U49956-5|ABD94086.1| 762|Caenorhabditis elegans Hypothetical pr... 27 9.1
U13644-7|AAM48536.2| 700|Caenorhabditis elegans Hypothetical pr... 27 9.1
U13644-6|AAB52678.1| 739|Caenorhabditis elegans Hypothetical pr... 27 9.1
>AL110487-1|CAB54424.1| 610|Caenorhabditis elegans Hypothetical
protein Y39E4B.1 protein.
Length = 610
Score = 250 bits (612), Expect = 5e-67
Identities = 114/182 (62%), Positives = 146/182 (80%)
Frame = +3
Query: 9 IRSLINPDKFIIVVEHDLSVLDYLSDFICCLYGVPGAYGVVTMPFSVREGINIFLDGFVP 188
IR ++ +++VVEHDL+VLDYLSDFICCLYGVPG YGVVT+P VREGIN+FL+GF+
Sbjct: 270 IRERVSDTNYVVVVEHDLAVLDYLSDFICCLYGVPGVYGVVTLPSGVREGINMFLEGFIR 329
Query: 189 TENMRFRTESLVFKVAESATEEEIKRMNHYEYPEMSKHMGDFDLRVMPGEFSDSEILVLL 368
TENMRFR L FK +E +E+IKR + +YP MSK +G+F L V G+FSDSEI+V+L
Sbjct: 330 TENMRFRESKLSFKTSEQ--QEDIKRTGNIKYPSMSKTLGNFHLDVEAGDFSDSEIIVML 387
Query: 369 GENGTGKTTFIRMLAGNLEPDDGSGQLPQLHISYKPQKISPKSQGLVRSLLHDKIRDAYI 548
GENGTGKTT I+M+AG+L+P+D + +LP + ISYKPQKISPKS+ VR +LHDKI++ Y
Sbjct: 388 GENGTGKTTMIKMMAGSLKPEDENTELPHVSISYKPQKISPKSETTVRFMLHDKIQNMYE 447
Query: 549 HP 554
HP
Sbjct: 448 HP 449
Score = 36.7 bits (81), Expect = 0.011
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +3
Query: 12 RSLINPDKFIIVVEHDLSVLDYLSDFICCLYGVPGAYGVVTMPFSVREGINIFL 173
R +++ K VVEHD + YL+D + G P P S+ EG+N FL
Sbjct: 516 RFIMHAKKTAFVVEHDFIMATYLADRVVVFEGQPSVKCTACKPQSLLEGMNRFL 569
Score = 35.5 bits (78), Expect = 0.026
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 351 EILVLLGENGTGKTTFIRMLAGNLEPDDGSGQLPQ 455
E+L L+G NG GK+T +++LAG +P+ G+ Q Q
Sbjct: 115 EVLGLVGTNGIGKSTALKILAGKQKPNLGNFQKEQ 149
>Z75537-2|CAA99835.1| 622|Caenorhabditis elegans Hypothetical
protein F18E2.2 protein.
Length = 622
Score = 35.9 bits (79), Expect = 0.020
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = +3
Query: 345 DSEILVLLGENGTGKTTFIRMLAGNLEPDDG 437
DS I ++ G NG GK+T +++L G ++P+DG
Sbjct: 430 DSRIAIV-GPNGVGKSTLLKLLIGKIDPNDG 459
>AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transporter
family protein 4 protein.
Length = 1802
Score = 35.9 bits (79), Expect = 0.020
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = +3
Query: 303 MGDFDLRVMPGEFSDSEILVLLGENGTGKTTFIRMLAGNLEPDDGSGQLPQLHISYKPQK 482
+ + +L++ PG+ + VLLG NG GK+T ML G P GS + I K
Sbjct: 615 VSNLNLKMYPGQCT-----VLLGHNGAGKSTTFSMLTGVASPSSGSAYVNDFDIRTSLPK 669
Query: 483 I 485
I
Sbjct: 670 I 670
>Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical
protein F22E10.2 protein.
Length = 1324
Score = 34.3 bits (75), Expect = 0.060
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Frame = +3
Query: 183 VPTENMRFRTESLVFKVAESATEEEIKRMNHYEYP--EMSKHMGDFDLRVMPGEFSDSEI 356
VP + R + KV T E + H+ YP + +K + +L V PG
Sbjct: 397 VPKIDPYSRHGKKIEKVVGKVTFENV----HFRYPTRKEAKVLNGLNLTVEPGTS----- 447
Query: 357 LVLLGENGTGKTTFIRMLAGNLEPDDGSGQL 449
+ L+G +G GK+T + +L EP+ GS Q+
Sbjct: 448 VALVGHSGCGKSTSVGLLTRLYEPEQGSVQI 478
>U10414-9|AAA19072.1| 712|Caenorhabditis elegans Hypothetical
protein F42A10.1 protein.
Length = 712
Score = 34.3 bits (75), Expect = 0.060
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +3
Query: 333 GEFSDSEILVLLGENGTGKTTFIRMLAGNLEPDDG 437
G ++S I ++ GENG GKTT +++L +L+P G
Sbjct: 519 GTHANSRICIV-GENGAGKTTLLKLLLDDLQPSVG 552
>AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transporter
family protein 2 protein.
Length = 1551
Score = 34.3 bits (75), Expect = 0.060
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 345 DSEILVLLGENGTGKTTFIRMLAGNLEPDDGSGQLPQLHI 464
+ +I LLG NG GKTT + +L G P G+ ++ Q I
Sbjct: 359 EGQITGLLGHNGAGKTTTMSILCGLYAPSSGTAKIYQRDI 398
Score = 32.7 bits (71), Expect = 0.18
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 351 EILVLLGENGTGKTTFIRMLAGNLEPDDGSGQLPQLHIS 467
E LLG NG GKTT ML + P GS ++ I+
Sbjct: 1234 ECFGLLGLNGAGKTTTFAMLTAKIRPGHGSIEMQNTRIN 1272
>AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical
protein Y53C10A.9 protein.
Length = 1564
Score = 32.3 bits (70), Expect = 0.24
Identities = 33/110 (30%), Positives = 43/110 (39%), Gaps = 12/110 (10%)
Frame = +3
Query: 186 PTENMRFR-TESL-VFKVAESATEEEIKRMNHYEYPEMSKHMGDF----DLRVMPGEFSD 347
P E R++ ES K E +E K + K G F DL + G
Sbjct: 1218 PRERKRYKGIESCKAVKEEEQLVQEVDKNETVLVIDGLVKDFGKFRAVNDLSISVGH--- 1274
Query: 348 SEILVLLGENGTGKTTFIRMLAGNLEPDDGSGQL------PQLHISYKPQ 479
E +LG NG GKTT ++ G P GS + +HI Y PQ
Sbjct: 1275 EECFGMLGANGAGKTTTFDIITGLTMPTGGSATIDGHDITETIHIGYCPQ 1324
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 282 YPEMSKHMGDFDLRVMPGEFSDSEILVLLGENGTGKTTFIRMLAGNLEPDDG 437
Y K + LR + G+ S +LLG NG GK+T M+ G + +G
Sbjct: 460 YQNGEKAVNGLSLRAIRGQVS-----ILLGHNGCGKSTTFGMITGMHQATEG 506
>Z92803-6|CAB07240.1| 215|Caenorhabditis elegans Hypothetical
protein K01G5.4 protein.
Length = 215
Score = 31.9 bits (69), Expect = 0.32
Identities = 15/24 (62%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = +3
Query: 357 LVLLGENGTGKTTFI-RMLAGNLE 425
LVL+G+ GTGKTTF+ R L G E
Sbjct: 12 LVLVGDGGTGKTTFVKRHLTGEFE 35
>Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical
protein W09D6.6 protein.
Length = 801
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 336 EFSDSEILVLLGENGTGKTTFIRMLAGNLEPDDGS 440
E + + + L+G +G+GK+T IR+L E +GS
Sbjct: 572 EIGNGQTVALVGSSGSGKSTLIRLLFRLFESTEGS 606
>Z82059-12|CAB04880.1| 622|Caenorhabditis elegans Hypothetical
protein T27E9.7 protein.
Length = 622
Score = 31.1 bits (67), Expect = 0.56
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 357 LVLLGENGTGKTTFIRMLAGNLEPDDG 437
+ L+G NG GK+T +++L ++ P DG
Sbjct: 424 IALVGPNGAGKSTLLKLLCTDVMPTDG 450
>U20783-1|AAC46845.1| 535|Caenorhabditis elegans unknown protein.
Length = 535
Score = 31.1 bits (67), Expect = 0.56
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 357 LVLLGENGTGKTTFIRMLAGNLEPDDG 437
+ L+G NG GK+T +++L ++ P DG
Sbjct: 423 IALVGPNGAGKSTLLKLLCTDVMPTDG 449
>AL032665-2|CAA21772.1| 622|Caenorhabditis elegans Hypothetical
protein T27E9.7 protein.
Length = 622
Score = 31.1 bits (67), Expect = 0.56
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 357 LVLLGENGTGKTTFIRMLAGNLEPDDG 437
+ L+G NG GK+T +++L ++ P DG
Sbjct: 424 IALVGPNGAGKSTLLKLLCTDVMPTDG 450
>AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 336 EFSDSEILVLLGENGTGKTTFIRMLAGNLEPDDGS 440
E + + + L+G +G+GK+T IR+L E +GS
Sbjct: 572 EIGNGQTVALVGSSGSGKSTLIRLLFRLFESTEGS 606
>AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 336 EFSDSEILVLLGENGTGKTTFIRMLAGNLEPDDGS 440
E + + + L+G +G+GK+T IR+L E +GS
Sbjct: 572 EIGNGQTVALVGSSGSGKSTLIRLLFRLFESTEGS 606
>AF490977-1|AAQ06435.1| 801|Caenorhabditis elegans ABC6 protein
protein.
Length = 801
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 336 EFSDSEILVLLGENGTGKTTFIRMLAGNLEPDDGS 440
E + + + L+G +G+GK+T IR+L E +GS
Sbjct: 572 EIGNGQTVALVGSSGSGKSTLIRLLFRLFESTEGS 606
>Z70205-7|CAA94120.2| 996|Caenorhabditis elegans Hypothetical
protein C11H1.4a protein.
Length = 996
Score = 30.7 bits (66), Expect = 0.74
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +3
Query: 357 LVLLGENGTGKTTFIRMLAGNL 422
+++LG NG+GKTTFI+ LA L
Sbjct: 504 VMVLGGNGSGKTTFIKKLARRL 525
>Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical
protein C48B4.4c protein.
Length = 1704
Score = 30.7 bits (66), Expect = 0.74
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 360 VLLGENGTGKTTFIRMLAGNLEPDDG 437
+LLG NG GK+T +AG + P +G
Sbjct: 577 ILLGHNGAGKSTTFSSIAGIIRPTNG 602
Score = 27.9 bits (59), Expect = 5.2
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Frame = +3
Query: 231 VAESATEEE--IKRMNHYE----YPEMSKHMGDFD-LRVMPGEFSDSEILVLLGENGTGK 389
V ES +EE + R+N +++K G F + + E LLG NG GK
Sbjct: 1358 VCESVSEERERVHRVNSQNSALVIKDLTKTFGRFTAVNELCLAVDQKECFGLLGVNGAGK 1417
Query: 390 TTFIRMLAGNLEPDDGSGQL 449
TT +L G G +
Sbjct: 1418 TTTFNILTGQSFASSGEAMI 1437
>Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical
protein C48B4.4b protein.
Length = 1691
Score = 30.7 bits (66), Expect = 0.74
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 360 VLLGENGTGKTTFIRMLAGNLEPDDG 437
+LLG NG GK+T +AG + P +G
Sbjct: 564 ILLGHNGAGKSTTFSSIAGIIRPTNG 589
Score = 27.9 bits (59), Expect = 5.2
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Frame = +3
Query: 231 VAESATEEE--IKRMNHYE----YPEMSKHMGDFD-LRVMPGEFSDSEILVLLGENGTGK 389
V ES +EE + R+N +++K G F + + E LLG NG GK
Sbjct: 1345 VCESVSEERERVHRVNSQNSALVIKDLTKTFGRFTAVNELCLAVDQKECFGLLGVNGAGK 1404
Query: 390 TTFIRMLAGNLEPDDGSGQL 449
TT +L G G +
Sbjct: 1405 TTTFNILTGQSFASSGEAMI 1424
>Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical
protein C48B4.4a protein.
Length = 1689
Score = 30.7 bits (66), Expect = 0.74
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 360 VLLGENGTGKTTFIRMLAGNLEPDDG 437
+LLG NG GK+T +AG + P +G
Sbjct: 564 ILLGHNGAGKSTTFSSIAGIIRPTNG 589
Score = 27.9 bits (59), Expect = 5.2
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Frame = +3
Query: 231 VAESATEEE--IKRMNHYE----YPEMSKHMGDFD-LRVMPGEFSDSEILVLLGENGTGK 389
V ES +EE + R+N +++K G F + + E LLG NG GK
Sbjct: 1343 VCESVSEERERVHRVNSQNSALVIKDLTKTFGRFTAVNELCLAVDQKECFGLLGVNGAGK 1402
Query: 390 TTFIRMLAGNLEPDDGSGQL 449
TT +L G G +
Sbjct: 1403 TTTFNILTGQSFASSGEAMI 1422
>U00043-12|AAC77504.2| 613|Caenorhabditis elegans Hypothetical
protein T26A5.1 protein.
Length = 613
Score = 30.7 bits (66), Expect = 0.74
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 318 LRVMPGEFSDSEILVLLGENGTGKTTFIRML 410
L+ + G E+L L+G +G GKTT + ML
Sbjct: 51 LKNVSGYAKSGELLALMGASGAGKTTLLNML 81
>AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding
cassette transporter protein.
Length = 1704
Score = 30.7 bits (66), Expect = 0.74
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 360 VLLGENGTGKTTFIRMLAGNLEPDDG 437
+LLG NG GK+T +AG + P +G
Sbjct: 577 ILLGHNGAGKSTTFSSIAGIIRPTNG 602
Score = 27.9 bits (59), Expect = 5.2
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Frame = +3
Query: 231 VAESATEEE--IKRMNHYE----YPEMSKHMGDFD-LRVMPGEFSDSEILVLLGENGTGK 389
V ES +EE + R+N +++K G F + + E LLG NG GK
Sbjct: 1358 VCESVSEERERVHRVNSQNSALVIKDLTKTFGRFTAVNELCLAVDQKECFGLLGVNGAGK 1417
Query: 390 TTFIRMLAGNLEPDDGSGQL 449
TT +L G G +
Sbjct: 1418 TTTFNILTGQSFASSGEAMI 1437
>AB054992-1|BAB62002.1| 996|Caenorhabditis elegans peroxin protein.
Length = 996
Score = 30.7 bits (66), Expect = 0.74
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +3
Query: 357 LVLLGENGTGKTTFIRMLAGNL 422
+++LG NG+GKTTFI+ LA L
Sbjct: 504 VMVLGGNGSGKTTFIKKLARRL 525
>Z67882-2|CAA91799.1| 1318|Caenorhabditis elegans Hypothetical
protein F22E10.1 protein.
Length = 1318
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 273 HYEYPEMSKH--MGDFDLRVMPGEFSDSEILVLLGENGTGKTTFIRMLAGNLEPDDG 437
H+ YP K + +L V PG + L+G +G GK+T + +L EP+ G
Sbjct: 423 HFRYPTRKKVKVLNGLNLTVKPGTS-----VALVGHSGCGKSTSVGLLTRLYEPEGG 474
>AF357878-1|AAK27716.1| 589|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform I protein.
Length = 589
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 336 EFSDSEILVLLGENGTGKTTFIRML 410
+F +++L+G+ TGKTTFIR L
Sbjct: 88 DFDAKPMILLVGQYSTGKTTFIRYL 112
>AF357877-1|AAK27715.1| 835|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform II protein.
Length = 835
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 336 EFSDSEILVLLGENGTGKTTFIRML 410
+F +++L+G+ TGKTTFIR L
Sbjct: 334 DFDAKPMILLVGQYSTGKTTFIRYL 358
>AF357876-1|AAK27714.1| 576|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform IV protein.
Length = 576
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 336 EFSDSEILVLLGENGTGKTTFIRML 410
+F +++L+G+ TGKTTFIR L
Sbjct: 70 DFDAKPMILLVGQYSTGKTTFIRYL 94
>AC006695-15|AAO25981.1| 555|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform f protein.
Length = 555
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 336 EFSDSEILVLLGENGTGKTTFIRML 410
+F +++L+G+ TGKTTFIR L
Sbjct: 54 DFDAKPMILLVGQYSTGKTTFIRYL 78
>AC006695-14|AAK73902.2| 576|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform d protein.
Length = 576
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 336 EFSDSEILVLLGENGTGKTTFIRML 410
+F +++L+G+ TGKTTFIR L
Sbjct: 70 DFDAKPMILLVGQYSTGKTTFIRYL 94
>AC006695-13|AAF39978.1| 786|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform a protein.
Length = 786
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 336 EFSDSEILVLLGENGTGKTTFIRML 410
+F +++L+G+ TGKTTFIR L
Sbjct: 285 DFDAKPMILLVGQYSTGKTTFIRYL 309
>AC006695-12|AAL65796.1| 613|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform e protein.
Length = 613
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 336 EFSDSEILVLLGENGTGKTTFIRML 410
+F +++L+G+ TGKTTFIR L
Sbjct: 112 DFDAKPMILLVGQYSTGKTTFIRYL 136
>AC006695-11|AAF39979.1| 835|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform b protein.
Length = 835
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 336 EFSDSEILVLLGENGTGKTTFIRML 410
+F +++L+G+ TGKTTFIR L
Sbjct: 334 DFDAKPMILLVGQYSTGKTTFIRYL 358
>AC006695-10|AAF39980.1| 589|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform c protein.
Length = 589
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 336 EFSDSEILVLLGENGTGKTTFIRML 410
+F +++L+G+ TGKTTFIR L
Sbjct: 88 DFDAKPMILLVGQYSTGKTTFIRYL 112
>Z69635-6|CAA93461.1| 695|Caenorhabditis elegans Hypothetical
protein F19B6.4 protein.
Length = 695
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 318 LRVMPGEFSDSEILVLLGENGTGKTTFIRMLAG-NLEPDDGSGQL 449
L+ + G E+ ++G +G GKTT + +L G NL+ + G +
Sbjct: 119 LKKIDGVARPGELTFIMGSSGAGKTTLLNILTGRNLKNIETDGDI 163
>Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical
protein F22E10.3 protein.
Length = 1327
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +3
Query: 273 HYEYPEM--SKHMGDFDLRVMPGEFSDSEILVLLGENGTGKTTFIRMLAGNLEPDDGS 440
H+ YP +K + +L V PG + L+G +G GK+T + +L EP+ G+
Sbjct: 435 HFRYPSRKDAKILNGLNLVVEPGTS-----VALVGHSGCGKSTSVGLLTRLYEPEAGN 487
>AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotein
related (146.8 kD)(pgp-14) protein.
Length = 1327
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +3
Query: 273 HYEYPEM--SKHMGDFDLRVMPGEFSDSEILVLLGENGTGKTTFIRMLAGNLEPDDGS 440
H+ YP +K + +L V PG + L+G +G GK+T + +L EP+ G+
Sbjct: 435 HFRYPSRKDAKILNGLNLVVEPGTS-----VALVGHSGCGKSTSVGLLTRLYEPEAGN 487
>AL032646-1|CAA21676.1| 385|Caenorhabditis elegans Hypothetical
protein Y54E2A.2 protein.
Length = 385
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/70 (27%), Positives = 37/70 (52%)
Frame = +3
Query: 210 TESLVFKVAESATEEEIKRMNHYEYPEMSKHMGDFDLRVMPGEFSDSEILVLLGENGTGK 389
T + V + ++ A +E ++ + ++ E+S + D L P + ++ +G G GK
Sbjct: 47 TAATVIEPSQKAMKESVRFLT--DFGEISDAISDL-LTSSP----NFNVISAIGPQGAGK 99
Query: 390 TTFIRMLAGN 419
+T + MLAGN
Sbjct: 100 STLLSMLAGN 109
>Z93782-3|CAB07855.1| 1294|Caenorhabditis elegans Hypothetical
protein C47A10.1 protein.
Length = 1294
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = +3
Query: 315 DLRVMPGEFSDSE---ILVLLGENGTGKTTFIRMLAGNLEPDDG 437
D++++ G D++ + L+G +G GK+T I++L PD G
Sbjct: 397 DVKILKGVSLDAQPGQTVALVGSSGCGKSTIIQLLQRFYNPDAG 440
>Z83217-3|CAB05682.3| 610|Caenorhabditis elegans Hypothetical
protein C10C6.5 protein.
Length = 610
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 318 LRVMPGEFSDSEILVLLGENGTGKTTFIRM-LAGNLEPDDGSGQL 449
L + G ++L L+G +G GKTT + M L+ NL + SG +
Sbjct: 51 LENVSGIAKPGQLLALMGASGAGKTTLLNMLLSRNLRGLETSGSV 95
>Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical
protein F55G11.9 protein.
Length = 1431
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 282 YPEMSKHMGDFDLRVMPGEFSDSEILVLLGENGTGKTTFIRMLAGNLEPDDG 437
Y K + LR + G+ S +LLG NG GK+T M+ G + +G
Sbjct: 456 YTNGEKAVNGLSLRAIRGQVS-----ILLGHNGCGKSTTFGMITGMHKATEG 502
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Frame = +3
Query: 351 EILVLLGENGTGKTTFIRMLAGNLEPD------DGSGQLPQLHISYKPQ 479
E +LG NG GKTT ++ G P DG +HI Y PQ
Sbjct: 1155 ECFGMLGANGAGKTTTFDIITGLTMPTGGRVTIDGHDISRTIHIGYCPQ 1203
>Z81484-12|CAB03973.1| 1294|Caenorhabditis elegans Hypothetical
protein C47A10.1 protein.
Length = 1294
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = +3
Query: 315 DLRVMPGEFSDSE---ILVLLGENGTGKTTFIRMLAGNLEPDDG 437
D++++ G D++ + L+G +G GK+T I++L PD G
Sbjct: 397 DVKILKGVSLDAQPGQTVALVGSSGCGKSTIIQLLQRFYNPDAG 440
>Z54271-5|CAA91035.2| 407|Caenorhabditis elegans Hypothetical
protein F21D5.5 protein.
Length = 407
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +3
Query: 342 SDSEILVLLGENGTGKTTFIRML 410
S+ EI++++G G+GK+TF +ML
Sbjct: 248 SEKEIILMVGFPGSGKSTFAKML 270
>Z46934-12|CAA87044.3| 539|Caenorhabditis elegans Hypothetical
protein ZK1320.6 protein.
Length = 539
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +3
Query: 315 DLRVMPGEFSDSEILVLLGENGTGKTTFIRML 410
D ++ G+F +S + VLLG +G GKT+ +R L
Sbjct: 359 DRKLHIGDFIESRV-VLLGLDGAGKTSIVRRL 389
>U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation of
germline protein5 protein.
Length = 1200
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/17 (64%), Positives = 16/17 (94%)
Frame = +3
Query: 345 DSEILVLLGENGTGKTT 395
D++ILV++GE G+GKTT
Sbjct: 555 DNQILVVVGETGSGKTT 571
>AF292046-1|AAG41142.1| 407|Caenorhabditis elegans polynucleotide
kinase 3' phosphataseprotein.
Length = 407
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +3
Query: 342 SDSEILVLLGENGTGKTTFIRML 410
S+ EI++++G G+GK+TF +ML
Sbjct: 248 SEKEIILMVGFPGSGKSTFAKML 270
>AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determining
protein MOG-5 protein.
Length = 1200
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/17 (64%), Positives = 16/17 (94%)
Frame = +3
Query: 345 DSEILVLLGENGTGKTT 395
D++ILV++GE G+GKTT
Sbjct: 555 DNQILVVVGETGSGKTT 571
>AF000264-2|AAC71121.1| 761|Caenorhabditis elegans Half transporter
(pgp related)protein 2 protein.
Length = 761
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 351 EILVLLGENGTGKTTFIRMLAGNLEPDDGS 440
E + L+G +G GK++ + ++ EPD+GS
Sbjct: 543 ETVALVGPSGGGKSSIVSLIEHFYEPDEGS 572
>AC006670-5|AAF39912.2| 356|Caenorhabditis elegans Hypothetical
protein K07A3.3a protein.
Length = 356
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 279 EYPEMSKHMGDFDLRVMPGEFSDSEILVLLGENGTGKTTFIRMLAGNLE 425
EY + S+ DL D ++LLG +GTGKT + LA L+
Sbjct: 171 EYVQKSQRQILKDLEKRQDMILDKSNMILLGASGTGKTFMTQKLAEVLD 219
>AC006670-4|AAU20843.1| 518|Caenorhabditis elegans Hypothetical
protein K07A3.3b protein.
Length = 518
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 279 EYPEMSKHMGDFDLRVMPGEFSDSEILVLLGENGTGKTTFIRMLAGNLE 425
EY + S+ DL D ++LLG +GTGKT + LA L+
Sbjct: 171 EYVQKSQRQILKDLEKRQDMILDKSNMILLGASGTGKTFMTQKLAEVLD 219
>AL110490-11|CAB54452.1| 620|Caenorhabditis elegans Hypothetical
protein Y48B6A.12 protein.
Length = 620
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 390 TTFIRMLAGNLEPDDGSGQLPQLHISYKPQKISPKSQGL 506
+T R L+ EPD + LH Y+P++ +P+ +G+
Sbjct: 14 STSTRCLSDKNEPDLSDPKTLALHKLYRPERTTPQKRGI 52
>Z92838-4|CAB07410.1| 1012|Caenorhabditis elegans Hypothetical protein
T03D8.5 protein.
Length = 1012
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Frame = +3
Query: 42 IVVEHDLSVLDYLSDFICCLYGVPGAYG------VVTMPFSVREGINIFLDGFVPTENMR 203
I+ +HD+ ++ + D C+ G+P G + +M FS+ + I F +P E +
Sbjct: 856 IIEQHDVYKVETIGDGYLCVSGLPHRNGNEHAKEISSMSFSLLKAIKTFRVPHLPKERIN 915
Query: 204 FR 209
R
Sbjct: 916 IR 917
>Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical
protein F29D10.4 protein.
Length = 1100
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 342 SDSEILVLLGENGTGKTTFIRMLAGNLEPDDGSGQLPQLHI 464
++S+ +++ GE+G GKT + + + G GQ Q HI
Sbjct: 98 NESQCVIISGESGAGKTVNAKFIMNYISRISGGGQKVQ-HI 137
>U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein.
Length = 1036
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 342 SDSEILVLLGENGTGKTTFIRMLAGNLEPDDGSGQLPQLHI 464
++S+ +++ GE+G GKT + + + G GQ Q HI
Sbjct: 36 NESQCVIISGESGAGKTVNAKFIMNYISRISGGGQKVQ-HI 75
>U13645-7|AAA20989.2| 598|Caenorhabditis elegans Hypothetical
protein C05D10.3 protein.
Length = 598
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 318 LRVMPGEFSDSEILVLLGENGTGKTTFIRMLAG-NLEPDDGSGQL 449
L + G ++L +LG +G GKTT + +L NL D G +
Sbjct: 10 LHNVSGMAESGKLLAILGSSGAGKTTLMNVLTSRNLTNLDVQGSI 54
>AF003146-3|AAB54203.2| 252|Caenorhabditis elegans Abc transporter
family protein 6 protein.
Length = 252
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 351 EILVLLGENGTGKTTFIRMLAGNLEPDDGSGQL 449
E +LG NG GKTT ++ G P GS +
Sbjct: 15 ECFGILGANGAGKTTTFDIITGLTIPTGGSATM 47
>Z70268-5|CAJ85767.2| 1204|Caenorhabditis elegans Hypothetical
protein T21E8.1b protein.
Length = 1204
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +3
Query: 315 DLRVMPG---EFSDSEILVLLGENGTGKTTFIRMLAGNLEPDDGS 440
D +V+ G + + E + L+G +G+GK+T +++L D G+
Sbjct: 336 DAQVLKGISFDVQNGECIALVGASGSGKSTVVQLLLHYYNIDSGN 380
>Z70268-4|CAA94220.3| 1263|Caenorhabditis elegans Hypothetical
protein T21E8.1a protein.
Length = 1263
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +3
Query: 315 DLRVMPG---EFSDSEILVLLGENGTGKTTFIRMLAGNLEPDDGS 440
D +V+ G + + E + L+G +G+GK+T +++L D G+
Sbjct: 395 DAQVLKGISFDVQNGECIALVGASGSGKSTVVQLLLHYYNIDSGN 439
>Z70268-3|CAA94219.3| 1263|Caenorhabditis elegans Hypothetical
protein T21E8.2 protein.
Length = 1263
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +3
Query: 315 DLRVMPG---EFSDSEILVLLGENGTGKTTFIRMLAGNLEPDDGS 440
D +V+ G + + E + L+G +G+GK+T +++L D G+
Sbjct: 395 DAQVLKGISFDVQNGECIALVGASGSGKSTVVQLLLHYYNIDSGN 439
>Z66524-9|CAA91422.3| 696|Caenorhabditis elegans Hypothetical
protein T13H5.1a protein.
Length = 696
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 258 IKRMNHYEYPEMSKHMGDFDLRVMPGEFSDSEILVLLGEN 377
++ MN+++YP M+ HM ++VM F S+I+ +N
Sbjct: 478 VEIMNYHQYPAMTSHM----VKVMKRTFMISDIMATGAQN 513
>Z66524-8|CAH10782.1| 753|Caenorhabditis elegans Hypothetical
protein T13H5.1b protein.
Length = 753
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 258 IKRMNHYEYPEMSKHMGDFDLRVMPGEFSDSEILVLLGEN 377
++ MN+++YP M+ HM ++VM F S+I+ +N
Sbjct: 535 VEIMNYHQYPAMTSHM----VKVMKRTFMISDIMATGAQN 570
>Z66523-11|CAA91417.3| 696|Caenorhabditis elegans Hypothetical
protein T13H5.1a protein.
Length = 696
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 258 IKRMNHYEYPEMSKHMGDFDLRVMPGEFSDSEILVLLGEN 377
++ MN+++YP M+ HM ++VM F S+I+ +N
Sbjct: 478 VEIMNYHQYPAMTSHM----VKVMKRTFMISDIMATGAQN 513
>Z66523-10|CAH04723.1| 753|Caenorhabditis elegans Hypothetical
protein T13H5.1b protein.
Length = 753
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 258 IKRMNHYEYPEMSKHMGDFDLRVMPGEFSDSEILVLLGEN 377
++ MN+++YP M+ HM ++VM F S+I+ +N
Sbjct: 535 VEIMNYHQYPAMTSHM----VKVMKRTFMISDIMATGAQN 570
>L26987-1|AAA62312.1| 627|Caenorhabditis elegans par-2 protein.
Length = 627
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 357 LVLLGENGTGKTTFIRML 410
LV+ G +G GKTTF+R +
Sbjct: 423 LVVFGHSGAGKTTFVRAI 440
>AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical
protein Y53F4B.9 protein.
Length = 1168
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +3
Query: 300 HMGDFDLRVMPGEFSDSEILVLLGENGTGKTTFIRMLA 413
H D D V + LVL+G +G GKT R LA
Sbjct: 800 HESDEDYEVEHQDDDLENPLVLIGPSGVGKTALFRALA 837
>AF106580-1|AAK73890.3| 582|Caenorhabditis elegans Abnormal
embryonic partitioningof cytoplasm protein 2, isoform b
protein.
Length = 582
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 357 LVLLGENGTGKTTFIRML 410
LV+ G +G GKTTF+R +
Sbjct: 378 LVVFGHSGAGKTTFVRAI 395
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 27.5 bits (58), Expect = 6.9
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Frame = +3
Query: 342 SDSEILVLLGENGTGKTTFIRMLAG---------NLEPDDGSGQLPQLHISYKPQKI 485
S +E L+L+GE G GKT+ ++ +A N+ P S +L Q YKP I
Sbjct: 377 SHNEPLLLVGETGVGKTSVVQAVADLIGVTLDVVNVSPTSDSDELIQ---GYKPTTI 430
>U97014-3|AAB52427.3| 856|Caenorhabditis elegans Hypothetical
protein T05E8.3 protein.
Length = 856
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 336 EFSDSEILVLLGENGTGKTTFIRML 410
E + E L+++GE G+GK+T + L
Sbjct: 173 ELASQETLIVIGETGSGKSTQVPQL 197
>U49956-7|AAL32232.1| 753|Caenorhabditis elegans Hypothetical
protein M03A1.6b protein.
Length = 753
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = -1
Query: 223 TKDSVLNRIFSVGTN--PSRNILIPSLTEKGIVTTP*APGTP*RQQMKSDR*SNTDKSCS 50
TKD+ L+R + +N P + +P ++ G V P GTP Q ++ R T+ CS
Sbjct: 4 TKDADLSRPSGLPSNGNPGSSTTVPPASKSGPVAPPRPSGTPVAPQ-RNRRRKVTELKCS 62
>U49956-6|ABD94087.1| 762|Caenorhabditis elegans Hypothetical
protein M03A1.6d protein.
Length = 762
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = -1
Query: 223 TKDSVLNRIFSVGTN--PSRNILIPSLTEKGIVTTP*APGTP*RQQMKSDR*SNTDKSCS 50
TKD+ L+R + +N P + +P ++ G V P GTP Q ++ R T+ CS
Sbjct: 13 TKDADLSRPSGLPSNGNPGSSTTVPPASKSGPVAPPRPSGTPVAPQ-RNRRRKVTELKCS 71
>U49956-5|ABD94086.1| 762|Caenorhabditis elegans Hypothetical
protein M03A1.6c protein.
Length = 762
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = -1
Query: 223 TKDSVLNRIFSVGTN--PSRNILIPSLTEKGIVTTP*APGTP*RQQMKSDR*SNTDKSCS 50
TKD+ L+R + +N P + +P ++ G V P GTP Q ++ R T+ CS
Sbjct: 13 TKDADLSRPSGLPSNGNPGSSTTVPPASKSGPVAPPRPSGTPVAPQ-RNRRRKVTELKCS 71
>U13644-7|AAM48536.2| 700|Caenorhabditis elegans Hypothetical
protein F56D2.6b protein.
Length = 700
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 345 DSEILVLLGENGTGKTTFIRMLAGNLEPDDGSGQLP 452
+++ + L+GE G+GKTT I A GQ P
Sbjct: 91 NNQCITLVGETGSGKTTQIPQWAVEFMKQQQQGQPP 126
>U13644-6|AAB52678.1| 739|Caenorhabditis elegans Hypothetical
protein F56D2.6a protein.
Length = 739
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 345 DSEILVLLGENGTGKTTFIRMLAGNLEPDDGSGQLP 452
+++ + L+GE G+GKTT I A GQ P
Sbjct: 91 NNQCITLVGETGSGKTTQIPQWAVEFMKQQQQGQPP 126
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,629,424
Number of Sequences: 27780
Number of extensions: 259467
Number of successful extensions: 948
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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