Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_G08
(605 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1676 - 35302498-35302836,35302911-35302997,35303063-353032... 30 1.2
04_04_0239 - 23843235-23843243,23843334-23844047,23844138-238442... 30 1.2
10_06_0006 - 9496990-9497592,9497695-9497802,9497884-9497997,949... 30 1.6
09_06_0123 - 20997498-20997512,20998015-20998100,20999066-209991... 28 5.0
04_04_1561 - 34435565-34436530,34437373-34437473,34438099-34438243 28 5.0
03_02_0373 - 7865708-7866310,7869547-7870443 28 5.0
06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258 27 8.7
03_06_0180 + 32175658-32178145,32178765-32178808 27 8.7
02_04_0363 + 22369461-22370127,22370240-22370310,22370412-223709... 27 8.7
>04_04_1676 -
35302498-35302836,35302911-35302997,35303063-35303286,
35303375-35303675,35303762-35303860,35304895-35305032,
35305108-35305326
Length = 468
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 37 GPTSWTSYLFSPASIPVWSGDASWSLLKQLISGDY 141
G + + YLF PA +P GD W LLK +I+ ++
Sbjct: 192 GGSGLSKYLFPPAKMPKGGGD--WPLLKDMIAQNH 224
>04_04_0239 -
23843235-23843243,23843334-23844047,23844138-23844287,
23844389-23844601,23844697-23844811,23844919-23846300,
23847217-23847279
Length = 881
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = -1
Query: 554 TSSLEVQKAMNPYLEPRPIRPLVCLNENTSFSMTGKPWAAPFSVTCPLSVSSMMVPLW-- 381
TSS +KA P P P V L + S +G P AP S T V + P+
Sbjct: 736 TSSAGAEKASKPAATPGPAPQAVPLPKPVSIPASG-PAPAPVSATTAAPVGAAAAPISEP 794
Query: 380 SSRTNALGCPFCSCRS 333
++ A+G P + R+
Sbjct: 795 TAPAAAIGMPSATARA 810
>10_06_0006 -
9496990-9497592,9497695-9497802,9497884-9497997,
9498170-9498219,9498346-9498434,9498542-9498738,
9498877-9499038,9499337-9499455,9499579-9499666,
9499744-9499849,9499968-9500056,9500167-9500319,
9500434-9500526,9500625-9500691,9500811-9500923,
9501544-9501639,9501782-9501961
Length = 808
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Frame = +1
Query: 277 PGQCRYVLIHDYVHR---NFTVLLQLQNGQPNALVLEDQ-SGTIIELTDNGQ-VTLNGAA 441
P Q Y + ++++ N +L + G P+ + + G++ + G VTL+ A
Sbjct: 679 PSQQLYHVPRSFLNKGEPNTLILFEEAGGDPSEVAVRTVVEGSVCASAEVGDTVTLSCGA 738
Query: 442 HGFPVIEKDVFSFKQTNGRIG 504
HG + DV SF GR G
Sbjct: 739 HGRTISSVDVASFGVARGRCG 759
>09_06_0123 -
20997498-20997512,20998015-20998100,20999066-20999198,
20999264-20999341,21000130-21000216,21001164-21001254,
21001338-21001488,21001567-21002296,21002404-21002820
Length = 595
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = +1
Query: 22 GYAASGPTSWTSYLFSPASIPVWSGDASWSLLKQLISGDYPDLL--TLVRTYRPRSI-NP 192
G GP SW + S A+ W AS LK L G P +V + +P + NP
Sbjct: 96 GIMGGGPGSWPALAESAAARGSWPKSASSDSLKSLSDGSAPSASEDLIVPSVQPHPVANP 155
Query: 193 L 195
+
Sbjct: 156 I 156
>04_04_1561 - 34435565-34436530,34437373-34437473,34438099-34438243
Length = 403
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Frame = +1
Query: 55 SYLFSPASIPVWSGDASWSLLKQLISGDYP--------DLLTLVRTYRPRSINPLDEMPA 210
S L + A+ V GDA + L+SG++P + +P ++ +DE
Sbjct: 272 SSLAAAAASAVLCGDALHQIAFPLVSGEFPWTEAFNAVSIQLAALATKPSEVDAVDEAVG 331
Query: 211 KLRAVVING 237
KL++V+ NG
Sbjct: 332 KLKSVLDNG 340
>03_02_0373 - 7865708-7866310,7869547-7870443
Length = 499
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 63 VLSCEHPGMVWRRVMEFAQTADIWRLSRLA 152
+L EHPG+ WR + F+ TA++ RLA
Sbjct: 118 LLGLEHPGVRWRAIRRFS-TAELLAPRRLA 146
>06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258
Length = 700
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +1
Query: 34 SGPTSWTSYLFSPASI--PVWSGDASWSLLKQLISGDYPDLLTLVRTYRPRSINPLDEMP 207
S SW S + P+ ++ W LL+ +S D PDLL V+ P + + MP
Sbjct: 345 SSRISWFMGTVSAVQVADPIRWPNSPWRLLQ--VSWDEPDLLQNVKRVSPWLVELVSNMP 402
Query: 208 A 210
A
Sbjct: 403 A 403
>03_06_0180 + 32175658-32178145,32178765-32178808
Length = 843
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Frame = -1
Query: 275 KVKCLPSNVKM--CCP---LMTTARSLAGISSSGLIDRGL*VRTKVSKSG*SPDISCLSK 111
K KCL K+ P L+T ++G +G +D+ L + + KSG PD L
Sbjct: 294 KCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVS 353
Query: 110 LHDASPDHTGMLAGE 66
L A D G G+
Sbjct: 354 LLPALTDLNGFNQGK 368
>02_04_0363 +
22369461-22370127,22370240-22370310,22370412-22370978,
22371056-22371301
Length = 516
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 388 RSGPPEPMRWAVRSVAAGV 332
R GP + +RW VRS+ AG+
Sbjct: 166 RGGPGDALRWVVRSMDAGL 184
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,592,639
Number of Sequences: 37544
Number of extensions: 383751
Number of successful extensions: 1100
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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