Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_G07
(480 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0345 - 3811057-3811236,3811342-3811615,3811732-3812289,381... 29 1.5
11_06_0495 - 24319531-24320831,24320923-24321109,24322919-243230... 29 2.6
12_02_0599 + 20897093-20898357,20898507-20898589,20899840-208999... 28 3.4
02_05_0844 - 32144417-32144764,32145588-32145686,32146218-321464... 28 4.5
12_01_0212 - 1605544-1605647,1605799-1605842,1606189-1606230,160... 27 6.0
02_04_0292 + 21642544-21642726 27 6.0
06_01_0183 + 1422798-1422829,1422989-1423239,1423669-1423945,142... 27 7.9
01_06_1807 - 40021733-40021987 27 7.9
>10_01_0345 -
3811057-3811236,3811342-3811615,3811732-3812289,
3812602-3812747,3812930-3813097,3813896-3814003,
3814859-3815029,3816557-3816949,3817522-3817617,
3817715-3817774,3818600-3818744,3819296-3819520,
3820106-3820254
Length = 890
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +3
Query: 294 YDKVTVSRWRQVHEYFKG--SYSRCIICKK--TRSDIVSCVIIMLK 419
Y V WR++HE++KG SR +IC +RS IV + LK
Sbjct: 111 YALVPQEVWRKLHEWYKGGPELSRRVICSSPTSRSYIVDVYPLRLK 156
>11_06_0495 -
24319531-24320831,24320923-24321109,24322919-24323062,
24324467-24324469
Length = 544
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -1
Query: 282 LHPTHTIRRYMSSVMDLEIHYFEQISNL 199
+ PT T+RR M++V L +H+F+Q S +
Sbjct: 331 VRPTPTVRRIMTNV--LSLHFFQQASGI 356
>12_02_0599 +
20897093-20898357,20898507-20898589,20899840-20899903,
20900057-20900354,20900385-20900426
Length = 583
Score = 28.3 bits (60), Expect = 3.4
Identities = 22/68 (32%), Positives = 29/68 (42%)
Frame = -2
Query: 413 HYYDATDDIRACFFANYTSAVGTFKILMYLPPA*YSDFVIN*RNYTPHTLYAGT*VP*WT 234
HY + D+R F AVG +M L D +I NYTP +G + WT
Sbjct: 246 HYLEFPADVRGACFGGCCQAVGVTNGVMKLVSLVPDDGLIA-ENYTPE---SGFTIVCWT 301
Query: 233 LRFIILSK 210
LR + K
Sbjct: 302 LRMDEMDK 309
>02_05_0844 -
32144417-32144764,32145588-32145686,32146218-32146410,
32147049-32147107,32147189-32147263,32147557-32147670,
32147776-32147895,32148204-32148216,32148421-32148512,
32149078-32149164,32149254-32149328,32149630-32149680,
32149852-32149947,32150135-32150221,32150312-32150368,
32150475-32150600,32150709-32150949,32151028-32151114,
32151260-32151637,32152847-32153187
Length = 912
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 309 VSRWR-QVHEYFKGSYSRCIICKKTRSDIVSCVIIMLK 419
VS W ++ ++ KG +C+ TR+D++S + LK
Sbjct: 306 VSNWESEIIKWLKGRVQLLALCESTRADVLSGIESFLK 343
>12_01_0212 -
1605544-1605647,1605799-1605842,1606189-1606230,
1606306-1606394,1606477-1606521,1606801-1606845,
1606874-1606981,1607065-1607150,1607553-1607640,
1608185-1608385,1608790-1608865,1608951-1609000,
1609082-1609144,1609225-1609278,1609395-1609497,
1610010-1610050,1610654-1610685,1612086-1612224
Length = 469
Score = 27.5 bits (58), Expect = 6.0
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 34 CPKWI*YNTLYLGNFVYWL 90
C W+ +NTL+ +F YW+
Sbjct: 68 CTSWVIFNTLFGLSFTYWM 86
>02_04_0292 + 21642544-21642726
Length = 60
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 276 PTHTIRRYMSSVMDLEIHYFEQ 211
P T+RRY S++ DL H FE+
Sbjct: 18 PPDTVRRYESAISDLAGHGFEE 39
>06_01_0183 +
1422798-1422829,1422989-1423239,1423669-1423945,
1424827-1425034,1425129-1425203,1425301-1425375,
1425494-1425574,1425666-1425740,1425829-1426002,
1426105-1426134
Length = 425
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 297 DKVTVSRWRQVHEYFKGSYSRCIICKKT 380
DK+ V+R + V F+ S+ R +IC+ T
Sbjct: 69 DKIEVARLQNVTRIFRVSHIRSVICRVT 96
>01_06_1807 - 40021733-40021987
Length = 84
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 267 TIRRYMSSVMDLEIHYFEQISNLCHGQQHSMQSTL 163
T+RRY S++ DL H FE+ L + +Q+ +
Sbjct: 45 TVRRYESAISDLAGHGFEEEGYLVINYKSDLQTVM 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,362,441
Number of Sequences: 37544
Number of extensions: 220392
Number of successful extensions: 405
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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