Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_G07
         (480 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81585-6|CAB04684.2|  482|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AF025456-1|AAB70959.3|  438|Caenorhabditis elegans Hypothetical ...    27   5.3  

>Z81585-6|CAB04684.2|  482|Caenorhabditis elegans Hypothetical
           protein T05E12.6a protein.
          Length = 482

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = -3

Query: 127 SNTFSLLIN*LYKASIQNYLNIMYCIKSIWDTRSSLVPNS 8
           SN  + ++N   + ++ +Y+N M  ++ I DT +++VPNS
Sbjct: 397 SNVATTMVNGS-RLTLTSYMNEMVLLQMIIDTSNTVVPNS 435


>AF025456-1|AAB70959.3|  438|Caenorhabditis elegans Hypothetical
           protein C46F9.4 protein.
          Length = 438

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 228 IHYFEQISNLCHGQQHSMQSTLRRIFPDKLCVYK 127
           +H F  IS L +G+++      R   P +LC++K
Sbjct: 9   VHTFNDISKLGNGKRYYSDIEKRHNIPWRLCIFK 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,855,097
Number of Sequences: 27780
Number of extensions: 208082
Number of successful extensions: 448
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)