Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_G05
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...   165   5e-42
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    28   0.85 
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    27   2.0  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   2.6  
SPCC61.02 |spt3||histone acetyltransferase complex subunit Spt3|...    26   3.4  
SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces pomb...    26   3.4  
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   4.5  
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    26   4.5  
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    26   4.5  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    25   6.0  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    25   6.0  
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    25   7.9  
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    25   7.9  
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    25   7.9  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    25   7.9  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    25   7.9  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   7.9  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    25   7.9  

>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score =  165 bits (400), Expect = 5e-42
 Identities = 80/166 (48%), Positives = 112/166 (67%), Gaps = 2/166 (1%)
 Frame = +2

Query: 65  MVLESTMICVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLAN--VE 238
           MVLE+TMI +DNS++M NGD++PTR +AQ+D V+++ + K   NPEN  GL+T+ +   +
Sbjct: 1   MVLEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQ 60

Query: 239 VLATLTSDVGRILSKLHRVQPNGNINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVDT 418
           VL+TLT D G+ LS +H +   GN     GI+IA LALKHR+ K  + RIV FVGSP+  
Sbjct: 61  VLSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVE 120

Query: 419 DEKELVKLAKRLKKEKVNCDVVSYGEDSENNPLLTAFVNTLNGKDS 556
           DEK L++LAKR+KK  V  D++  GE  +N   L  F++  N  DS
Sbjct: 121 DEKNLIRLAKRMKKNNVAIDIIHIGE-LQNESALQHFIDAANSSDS 165


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 28.3 bits (60), Expect = 0.85
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 125 FLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLANVEVLATLTSDVGRILSKLH 289
           F P+RL   +  V L   S +  + EN++ +  L N  +L  +   + R + KLH
Sbjct: 664 FDPSRLLIFKGVVKLKASSYSNGDTENDIHMFLLDNFLLLCKIKIQMKRRVHKLH 718


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 404 SPVDTDEKELVKLAKRLKKEKVNCDVVSYGED 499
           +PVDTD+   VK+ K L+  + +  V  Y +D
Sbjct: 395 NPVDTDKMTDVKVEKSLESSRKSLPVYQYKDD 426


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +1

Query: 343 FGSKAPSRKESQDAHSSFRRLPCRYR-RKRTSQTCKA 450
           +GS++PS   S D+H S  R P R R R R+S++ ++
Sbjct: 126 YGSRSPSPHSSVDSHQS--RSPVRSRDRDRSSRSSRS 160


>SPCC61.02 |spt3||histone acetyltransferase complex subunit
           Spt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 307

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 185 TRSNPENN-VGLLTLANVEVLATLTSDVGRILSKLHRVQ 298
           T + P+N+ V +L     E++ATLT +   +  ++ R+Q
Sbjct: 202 TDTRPDNDIVDILGFLTFEIVATLTEEALAVKDRMDRIQ 240


>SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 316

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 19/92 (20%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
 Frame = +2

Query: 59  FKMVLESTMICVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLANVE 238
           F  V  S   C+D +D   N DF  + L A   A       +   +  ++  +L ++  +
Sbjct: 191 FGEVPTSANRCIDLTDVRGNDDFFSSDLSADDFAKTFGNLKEISGSTAHSQLILLMSERD 250

Query: 239 VLATLTSDVGRILSKLHR-VQPNGNINLLTGI 331
              + ++D  ++L++    ++P  + + L+GI
Sbjct: 251 EFVSPSTDKAQLLNRFRESIRPTTSNSSLSGI 282


>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +2

Query: 344 LALKHRQGKNHKMRIVVFVGS-PVDTDEKELVKLAKR 451
           L  K ++GKN+  ++++FVG+ P D+  + L    KR
Sbjct: 78  LKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKR 114


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 376 QDAHSSFRRLPCRYRRKRTSQTCKATKERKGKL 474
           ++ H SF+++ C+  RKR       TK+R  KL
Sbjct: 260 ENQHHSFQQI-CQTLRKRLENDSSTTKQRLSKL 291


>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 467 VNCDVVSYGEDSENNPLLTAFVNTLNG 547
           VN ++VS  ED++    L  F+N + G
Sbjct: 336 VNTELVSLKEDADEKTFLDTFLNAIEG 362


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 236 EVLATLTSDVGRILSKLHRVQPNGNI 313
           +V+++  +DV RIL +L RVQ N ++
Sbjct: 260 QVISSTMNDVLRILDRLPRVQANESV 285


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +2

Query: 401 GSPVDTDEKELVKLAKRLKKEKVNCDVVSYGEDSENNPLLTAFVNTLN 544
           GS +  DE       +  +++  N D++++    +N PLLT  +++L+
Sbjct: 4   GSKLSEDETFSQTFNEEEQEDSRNKDILAFDPSVDNEPLLTKKLSSLS 51


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 24  ELSYTKYSENNCSKWSWKVL*SVWITVII*E 116
           E+    YS N+ S W+ + + S+W T++I E
Sbjct: 26  EMGSFAYSGNSESVWTGENITSIWKTILINE 56


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 430 FFFVGIYRGAYENYYAHLVIL 368
           F +VGI  G Y N+ AH++ +
Sbjct: 345 FCYVGICIGVYGNFVAHVIAM 365


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +2

Query: 413 DTDEKELVKLAKRLKKEKVNCDVVSYGEDSENNPLL--TAFVNTLNGKDST 559
           D DE+E+++ A R++++     + +  +  +N P+L  TA + TL+   S+
Sbjct: 477 DADEEEVLEKASRIREKNKLTMLAARQKKIKNRPVLPRTAGIRTLDELQSS 527


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -2

Query: 257 WSKWL-ALRHLLASINQHYF 201
           W K L +LRH  AS+N++Y+
Sbjct: 292 WQKSLESLRHYTASLNEYYY 311


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 24  ELSYTKYSENNCSKWSWKVL*SVWITVII*E 116
           E+    YS N+ S W+ + + S+W T++I E
Sbjct: 26  EMGSFAYSGNSESVWTGENITSIWKTILINE 56


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +2

Query: 404 SPVDTDEKELVKLAKRLKKEKVNCDVVSYGEDSENNPLLTAFVNTLNGKDST--TGGS 571
           SP D    E +K A  +   K N D  + G  SENN L    VN +  KDS    GGS
Sbjct: 86  SPFDASIVESLKKAGGIILGKTNMDEFAMGVKSENN-LFGRTVNPV-VKDSNYDVGGS 141


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 24  ELSYTKYSENNCSKWSWKVL*SVWITVII*E 116
           E+    YS N+ S W+ + + S+W T++I E
Sbjct: 26  EMGSFAYSGNSESVWTGENITSIWKTILINE 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,250
Number of Sequences: 5004
Number of extensions: 46983
Number of successful extensions: 141
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)