Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_G05
         (576 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0240 - 2506901-2507008,2507950-2508322,2508418-2508612,250...   146   8e-36
04_04_1031 - 30254665-30255794,30256181-30257036                       29   3.5  
10_08_0424 - 17803984-17805270                                         27   8.1  
06_01_0318 - 2284481-2284594,2285340-2286044,2286589-2286609,228...    27   8.1  

>10_01_0240 -
           2506901-2507008,2507950-2508322,2508418-2508612,
           2508771-2508885,2510027-2510132,2510253-2510366,
           2510521-2510538
          Length = 342

 Score =  146 bits (355), Expect = 8e-36
 Identities = 82/162 (50%), Positives = 106/162 (65%), Gaps = 3/162 (1%)
 Frame = +2

Query: 71  LESTMICVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLA--NVEVL 244
           LE+T+ICVD+S++MRNGD+ PTRLQAQ+DA NLV  +K  SNPEN VG+L +A   V VL
Sbjct: 5   LEATVICVDDSEWMRNGDYPPTRLQAQEDAANLVVGTKMTSNPENTVGVLAMAGDRVRVL 64

Query: 245 ATLTSDVGRILSKLHRVQPNGNINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVDTDE 424
              TSD  + L+ +H ++ +G  NL   + IA L LK+R  K    RIVVFVGSPV  DE
Sbjct: 65  LAPTSDPVKFLACMHGLEASGEANLTATLNIAELVLKNRPDKRLSQRIVVFVGSPV-KDE 123

Query: 425 KELVKLAKRLKKEKVNCDVVSYGEDSENNP-LLTAFVNTLNG 547
           K L  + K+LKK  V+ DVV +GE  +  P  L A V  + G
Sbjct: 124 K-LETIGKKLKKYNVSLDVVEFGESDDEKPEKLEALVAAVGG 164


>04_04_1031 - 30254665-30255794,30256181-30257036
          Length = 661

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 308 CHSVELYAVLIVCARHRWSKWLALRHLLASINQHYFL 198
           C    L  +L++     W+ WL  +  LA I Q YF+
Sbjct: 284 CQVTGLALLLLLLVLIFWTHWLVKKRKLAKIRQRYFM 320


>10_08_0424 - 17803984-17805270
          Length = 428

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 350 LKHRQGKNHKMRIVVFVGSPVDTDEKELVKLAKRLKKEKVNCDVVSY 490
           LKHR   +      V  G     DE+   KL K +  +K+  +VV+Y
Sbjct: 216 LKHRPAPDIVSYNTVLAGYSAQGDEEGFEKLLKEISAKKLEPNVVTY 262


>06_01_0318 -
           2284481-2284594,2285340-2286044,2286589-2286609,
           2287186-2287257,2287762-2287842,2288059-2288133,
           2288197-2288484
          Length = 451

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 340 TFGSKAPSRKESQDAHSSFRRLPCRYRRKRTSQ-TCKATKERKGKLR 477
           +FG +AP R  ++D+    + LP    R+R+S   C  +  R+ + R
Sbjct: 239 SFGQRAPHRASTRDSSPVRKTLPSARDRERSSDGECARSSPRRRRSR 285


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,473,529
Number of Sequences: 37544
Number of extensions: 282587
Number of successful extensions: 656
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)