Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_G04
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    27   2.0  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    26   2.7  
SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyc...    25   4.7  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   8.2  

>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 366 ELHAYANLYLKRSYEYLLSASYIN 437
           +L  Y N++L  SY+YLLS S  N
Sbjct: 90  DLLEYLNIFLPSSYKYLLSNSGAN 113


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 384  NLYLKRSYE-YLLSASYINNYKINRAGFSKMFRKLS 488
            + Y   +Y  YLLS  Y  N K+N   F K FR+ S
Sbjct: 1401 HFYYGATYSRYLLSLFYKTNDKVNFLQFLKRFRRSS 1436


>SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 167

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 127 LYRHWRRRRLPTQRVPTRPR*NLP 56
           L+R+ +  RLP +R PT P  N+P
Sbjct: 4   LWRNLKSVRLPFRRAPTLPLYNVP 27


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 123  TDTGAEGDFQHKEYLLDRDK 64
            T T A+GD +HK Y L +D+
Sbjct: 1254 THTKAKGDIEHKVYQLLKDQ 1273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,970,682
Number of Sequences: 5004
Number of extensions: 38424
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)