Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_G04
         (493 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0188 + 13921731-13921938,13922076-13922338,13922463-13923257     28   3.5  
08_01_0108 - 791835-792398                                             27   6.2  
07_01_0045 - 357463-357921                                             27   6.2  
06_01_0193 - 1491710-1491739,1492194-1492319,1492631-1492766,149...    27   6.2  
04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004     27   6.2  
04_03_0284 + 13896307-13896765                                         27   6.2  
03_06_0695 - 35599454-35600018,35600445-35600491,35600556-35600672     27   6.2  
03_05_0883 + 28483429-28484385,28485090-28485398                       27   8.2  
01_06_0250 + 27876358-27879261                                         27   8.2  

>10_07_0188 + 13921731-13921938,13922076-13922338,13922463-13923257
          Length = 421

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 83  YSLCWKSPSAPVSVQCC 133
           + +CW  PSAP S  CC
Sbjct: 240 WPVCWAPPSAPGSYDCC 256


>08_01_0108 - 791835-792398
          Length = 187

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 184 RRLCIDGIKFITRTVESAALYRH-WRRRRLPTQRVPTRPR 68
           RRL + G   +   V  A   RH WRRRR P +R   R R
Sbjct: 26  RRLDLSGAAAVLAEVAVADERRHSWRRRRRPWRRGGARGR 65


>07_01_0045 - 357463-357921
          Length = 152

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 184 RRLCIDGIKFITRTVESAALYRH-WRRRRLPTQRVPTRPR 68
           RRL + G   +   V  A   RH WRRRR P +R   R R
Sbjct: 26  RRLDLSGAAAVLAEVAVADERRHSWRRRRRPWRRGGARGR 65


>06_01_0193 -
           1491710-1491739,1492194-1492319,1492631-1492766,
           1493048-1493112,1493213-1493305,1493433-1493498,
           1493763-1493843,1493977-1494032,1494692-1494780,
           1495340-1495425,1495531-1495647,1496109-1496254,
           1496665-1496725,1496831-1496914,1497028-1497135,
           1497286-1497388,1497802-1497845,1498100-1498584,
           1499417-1499603,1500150-1500362,1501066-1501323
          Length = 877

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 184 RRLCIDGIKFITRTVESAALYRH-WRRRRLPTQRVPTRPR 68
           RRL + G+  +   V      RH WRRRR P +R   R R
Sbjct: 284 RRLDLSGVAAVLAEVAVTDERRHSWRRRRRPWRRGGARGR 323


>04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004
          Length = 578

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 8   KTFIYVFVRLYCTYTVRKVLSRSSRYSLCWKSPSAPVS 121
           +TF ++ + LY +  VR    R  R+S+ W S + P++
Sbjct: 427 RTFFFMALFLYMSLVVRINFFRGFRFSIAWWSYTFPMT 464


>04_03_0284 + 13896307-13896765
          Length = 152

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 184 RRLCIDGIKFITRTVESAALYRH-WRRRRLPTQRVPTRPR 68
           RRL + G   +   V  A   RH WRRRR P +R   R R
Sbjct: 26  RRLDLSGAAAVLAEVAVANERRHSWRRRRRPWRRGGARGR 65


>03_06_0695 - 35599454-35600018,35600445-35600491,35600556-35600672
          Length = 242

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 184 RRLCIDGIKFITRTVESAALYRH-WRRRRLPTQRVPTRPR 68
           RRL + G   +   V  A   RH WRRRR P +R   R R
Sbjct: 116 RRLDLSGAAAVLAEVAVADERRHSWRRRRRPWRRGGARGR 155


>03_05_0883 + 28483429-28484385,28485090-28485398
          Length = 421

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 366 RQRRGCSHCIRRIARYTCP 310
           R  R C  C+RR AR+ CP
Sbjct: 15  RTARACDGCMRRRARWHCP 33


>01_06_0250 + 27876358-27879261
          Length = 967

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 336 EYNDYSHVAGELHAYANLYLKRSYEYLLSASYINNYKINRA 458
           EY  + H  GE++      ++  +  LL+ SY  +Y++  A
Sbjct: 508 EYMFFRHAMGEMNKSRTTVVRMDHSQLLNVSYDISYRVRSA 548


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,368,242
Number of Sequences: 37544
Number of extensions: 238387
Number of successful extensions: 671
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)