Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_G04
         (493 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53149-1|AAD31546.1|  328|Caenorhabditis elegans Prion-like-(q/n...    33   0.085
Z81553-4|CAB04492.2|  316|Caenorhabditis elegans Hypothetical pr...    28   3.2  
AF067209-1|AAC16982.2|  553|Caenorhabditis elegans Warthog (hedg...    28   3.2  
AL034364-1|CAA22251.1|  272|Caenorhabditis elegans Hypothetical ...    28   4.2  
U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin rec...    27   7.4  
L16559-5|AAA27932.2|  365|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-l...    27   7.4  
Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z70306-1|CAA94322.1|  355|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U53149-1|AAD31546.1|  328|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 16
           protein.
          Length = 328

 Score = 33.5 bits (73), Expect = 0.085
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
 Frame = -3

Query: 311 QRQSCRC---RHTFSCHSFVT--TVTCVNGRQSQETSYCECDFLHCSKAI 177
           +RQ+C+C   + + SC+S +   T TC N +QS   S C C     SK++
Sbjct: 25  KRQNCKCSPPQSSCSCNSAIQSQTCTCHNTQQSTSASNCNCVLKSNSKSV 74


>Z81553-4|CAB04492.2|  316|Caenorhabditis elegans Hypothetical
           protein F56H6.4 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
 Frame = +2

Query: 26  FVRLYCTYTVRKVLSRSSRYSLCW--KSPSAPV-SVQCCTFDGSRYKFNSINTQSPWNNE 196
           F+  +  YT R +++   +   C   KS S    ++ C  +D  +Y  NS +    W +E
Sbjct: 50  FIVPFVNYTKRFMVAPDKKLISCTLRKSMSQLAENIMCLLYDEQQYFANSQSLNDTWKDE 109

Query: 197 E--NHIRSSLSP 226
               H RS L+P
Sbjct: 110 RKCEHDRSYLNP 121


>AF067209-1|AAC16982.2|  553|Caenorhabditis elegans Warthog
           (hedgehog-like family)protein 9 protein.
          Length = 553

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 104 PSAPVSVQCCTFDGSRY 154
           P  P+ +QCCTF+G R+
Sbjct: 121 PRQPLVLQCCTFEGLRF 137


>AL034364-1|CAA22251.1|  272|Caenorhabditis elegans Hypothetical
           protein W06D4.3 protein.
          Length = 272

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -2

Query: 423 QIADIRMTA*GRGWRRHEVRQRRGCSHCIRRIARYTCPETKLSL*THI 280
           +I D    A G+  ++    Q+R  SHCI+++  YT  E+ + L  H+
Sbjct: 120 KILDAYSIACGKIGQKERQLQKRTRSHCIKKMRMYTADES-VELNNHV 166


>U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin
           receptor protein 2 protein.
          Length = 1338

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 62  VLSRSSRYSLCWKSPSAPVSVQCCTFDGSRYKFNSINTQS 181
           V   S+ YS C  SPS+  +V C T   S    ++  TQS
Sbjct: 409 VTGSSTSYSQCPSSPSSTANVICSTVPQSTASVSARPTQS 448


>L16559-5|AAA27932.2|  365|Caenorhabditis elegans Hypothetical
           protein C06E1.7 protein.
          Length = 365

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 98  KSPSAPVSVQCCTFDGSRYKFNSINTQ 178
           K+   P+S +CC FD    KFN+I+++
Sbjct: 132 KATKVPLSEKCCIFDNPD-KFNNISSE 157


>AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-like
           protein LAT-2 protein.
          Length = 1338

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 62  VLSRSSRYSLCWKSPSAPVSVQCCTFDGSRYKFNSINTQS 181
           V   S+ YS C  SPS+  +V C T   S    ++  TQS
Sbjct: 409 VTGSSTSYSQCPSSPSSTANVICSTVPQSTASVSARPTQS 448


>Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical
           protein Y70C5C.2 protein.
          Length = 414

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 137 FDGSRYKFNSINTQSPWNN 193
           FDGS + FN IN  SP  N
Sbjct: 228 FDGSPWNFNQINPASPKKN 246


>Z70306-1|CAA94322.1|  355|Caenorhabditis elegans Hypothetical
           protein C06G8.1 protein.
          Length = 355

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 356 RRWRTSCLRQPLPQAVIRISAICFIYQQLQN 448
           RRW TS L  PL  A   +S   F+Y  L+N
Sbjct: 154 RRWATSTLPLPLCIANFLVSTEWFLYGLLKN 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,980,196
Number of Sequences: 27780
Number of extensions: 217174
Number of successful extensions: 610
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)