Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_G04
         (493 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   1.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   1.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   1.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   1.8  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   1.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   5.4  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   9.4  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 15/69 (21%), Positives = 26/69 (37%)
 Frame = +2

Query: 17  IYVFVRLYCTYTVRKVLSRSSRYSLCWKSPSAPVSVQCCTFDGSRYKFNSINTQSPWNNE 196
           ++  +R+Y   TV  ++ R    S   +    P     C+F      +        W N+
Sbjct: 162 VHFALRIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIESISYEQTAITYVWKND 221

Query: 197 ENHIRSSLS 223
           E  +R S S
Sbjct: 222 EGTLRKSPS 230


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 15/69 (21%), Positives = 26/69 (37%)
 Frame = +2

Query: 17  IYVFVRLYCTYTVRKVLSRSSRYSLCWKSPSAPVSVQCCTFDGSRYKFNSINTQSPWNNE 196
           ++  +R+Y   TV  ++ R    S   +    P     C+F      +        W N+
Sbjct: 162 VHFALRIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIESISYEQTAITYVWKND 221

Query: 197 ENHIRSSLS 223
           E  +R S S
Sbjct: 222 EGTLRKSPS 230


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 15/69 (21%), Positives = 26/69 (37%)
 Frame = +2

Query: 17  IYVFVRLYCTYTVRKVLSRSSRYSLCWKSPSAPVSVQCCTFDGSRYKFNSINTQSPWNNE 196
           ++  +R+Y   TV  ++ R    S   +    P     C+F      +        W N+
Sbjct: 213 VHFALRIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIESISYEQTAITYVWKND 272

Query: 197 ENHIRSSLS 223
           E  +R S S
Sbjct: 273 EGTLRKSPS 281


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 15/69 (21%), Positives = 26/69 (37%)
 Frame = +2

Query: 17  IYVFVRLYCTYTVRKVLSRSSRYSLCWKSPSAPVSVQCCTFDGSRYKFNSINTQSPWNNE 196
           ++  +R+Y   TV  ++ R    S   +    P     C+F      +        W N+
Sbjct: 162 VHFALRIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIESISYEQTAITYVWKND 221

Query: 197 ENHIRSSLS 223
           E  +R S S
Sbjct: 222 EGTLRKSPS 230


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/43 (23%), Positives = 19/43 (44%)
 Frame = +3

Query: 321 NAQYGEYNDYSHVAGELHAYANLYLKRSYEYLLSASYINNYKI 449
           N +Y  YN+Y++     + Y N Y     +   + +YI    +
Sbjct: 321 NYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNINYIEQIPV 363


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 149 RYKFNSINTQSPWNNEENHI 208
           RYK    N    W ++E HI
Sbjct: 178 RYKEEESNENYNWEHKETHI 197


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 161 NSINTQSPWNNEENHIR 211
           N   T   W NEE+H+R
Sbjct: 212 NDDKTFLVWCNEEDHLR 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,764
Number of Sequences: 438
Number of extensions: 3055
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)