Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_G02
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    27   1.5  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    26   3.5  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    25   4.6  
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    25   8.1  
SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po...    25   8.1  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    25   8.1  

>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -3

Query: 461 LLTDPDKRSMFDSGTVPLDPEAQRAGGHG-GPFNNPFHHFQHGSPF 327
           +L+DP+ R  FDSG V L+P  +  GG G  PF +    +Q G  F
Sbjct: 400 ILSDPESRRRFDSG-VDLEPGME--GGAGMDPF-DILRAYQAGGSF 441


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +2

Query: 11  IIKSIQVIKLWIKLSKLESTRNPNESF 91
           I+K  Q I  W KL   E  RNPN  F
Sbjct: 762 ILKLPQPISTWNKLLDSECHRNPNMEF 788


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -3

Query: 431 FDSGTV-PLDPEAQRAGGHGGPFNNPF 354
           F  GT+  + P+A   GG   PF NPF
Sbjct: 53  FSIGTMFIITPQANFEGGENDPFANPF 79


>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 488 TWGYTCVVQLLTDPDKRSMFDSGTVP 411
           +W Y+ +  +L + +  S FDSG+ P
Sbjct: 424 SWEYSILKNILLNDEPGSTFDSGSPP 449


>SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 142 IPLEKFNYFKGNVSCIDSGLN 204
           I  EK   FK NV C+  GLN
Sbjct: 162 IAKEKAGIFKKNVPCVVDGLN 182


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 194 ESIHDTLPLK*LNFSNGIKSLGKTNNFIKLCVILR 90
           +S+H+T+ LK    + G         FI+LCV LR
Sbjct: 29  QSLHETIVLKRSRNAQGFSLEPIMMRFIELCVHLR 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,814,858
Number of Sequences: 5004
Number of extensions: 33088
Number of successful extensions: 83
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)