Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_G02
         (490 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0712 + 27476319-27476569,27477150-27477402,27477535-274779...    30   0.87 
05_06_0267 - 26784861-26784896,26785324-26785404,26785530-267857...    28   3.5  
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647     28   3.5  
06_01_1069 + 8731567-8731632,8732120-8732281,8733028-8733081,873...    27   6.1  
04_04_0680 - 27217563-27220088                                         27   6.1  
06_03_0801 + 24714725-24715501                                         27   8.1  
05_03_0645 + 16529635-16529794,16530188-16530312,16531100-165311...    27   8.1  
02_05_0183 + 26537676-26537752,26538481-26538649,26538736-265389...    27   8.1  

>04_04_0712 +
           27476319-27476569,27477150-27477402,27477535-27477914,
           27479738-27479864,27479945-27480110,27480221-27480359,
           27481854-27481987,27482087-27482229,27482367-27482565,
           27482688-27483010
          Length = 704

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -3

Query: 464 QLLTDPDKRSMFDSGTVPLDPEAQRAG-GHGGPFNNPFHHFQ 342
           ++LTDP+KR ++D        +A + G G G  F+NPF  F+
Sbjct: 346 EVLTDPEKRDIYDQ----YGEDALKDGMGGGSDFHNPFDIFE 383


>05_06_0267 -
           26784861-26784896,26785324-26785404,26785530-26785702,
           26785780-26785938,26786199-26786328,26786447-26786609,
           26787027-26787109,26787605-26787664,26787819-26787940,
           26789126-26789275,26789354-26789546,26790156-26790393,
           26791240-26791320,26791403-26791647
          Length = 637

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = +1

Query: 343 WKW-WKGLLKGPPCPPAR---CASGSRGTVPESNIDRLSGSVSN 462
           W W W+   +  P PP        GS G +P SN+ R S  +S+
Sbjct: 73  WVWDWRNPNRSVPPPPTEDIPAVPGSSGVLPLSNLQRHSEKLSD 116


>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
          Length = 252

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +1

Query: 337 PCWKWWKGLLKGPPCPPARCASGSRGTVPESN 432
           P   WW      PPCPP   A GS   V + N
Sbjct: 222 PPQPWWPIPFPKPPCPPG--ADGSSSAVDDKN 251


>06_01_1069 +
           8731567-8731632,8732120-8732281,8733028-8733081,
           8733557-8733630,8733706-8733786,8734902-8735079,
           8735336-8735506,8736113-8736202,8736284-8736331,
           8736447-8736562,8736655-8736733,8737101-8737223
          Length = 413

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 404 PEAQRAGGHGGPFNNPFHHFQHGSP 330
           P  Q AGG  GP  NP + F  G P
Sbjct: 241 PPVQPAGGASGPNANPLNLFPQGIP 265


>04_04_0680 - 27217563-27220088
          Length = 841

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 325 WKGLPCWKWWKGLLKGPPC-PPARCASGSRGTV 420
           +KGL  W++  G ++ PP  PPA  A+ + G V
Sbjct: 18  YKGLVPWRFQPGFVRPPPVKPPAAAAAVAGGGV 50


>06_03_0801 + 24714725-24715501
          Length = 258

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = +1

Query: 346 KWWKGLLKGPPCPP---ARCASGSRGTVPESNIDRLSGSV 456
           KWW+  L  PP PP      A+ +    PES     +G++
Sbjct: 7   KWWQAALDFPPPPPPVNVPAAAPAGAASPESKQQAAAGAI 46


>05_03_0645 +
           16529635-16529794,16530188-16530312,16531100-16531173,
           16531961-16532006,16532638-16532730,16534429-16535886
          Length = 651

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = +1

Query: 376 PCPP----ARCASGSRGTVPESNIDRLSGSVSNCT 468
           P PP    A    GSRG +  S++DRLSGS   C+
Sbjct: 458 PAPPGEEVAEAVGGSRGWL-RSSLDRLSGSWRACS 491


>02_05_0183 +
           26537676-26537752,26538481-26538649,26538736-26538910,
           26539008-26539137,26540425-26540558,26540629-26540771,
           26540894-26541092,26541183-26541514
          Length = 452

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 464 QLLTDPDKRSMFDSGTVPLDPEAQRAGGHGGPFNNPFHHFQ 342
           ++L DP+KR ++D        E    GG    F++PF  F+
Sbjct: 91  EVLNDPEKREIYDQYGEDALKEGM-GGGSSSDFHSPFDLFE 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,648,669
Number of Sequences: 37544
Number of extensions: 217772
Number of successful extensions: 704
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)