Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_G02
         (490 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28424-1|AAC50502.1|  504|Homo sapiens p58 protein.                    58   2e-08
BC047936-1|AAH47936.2|  504|Homo sapiens DnaJ (Hsp40) homolog, s...    58   2e-08
AY795482-1|AAV40838.1|  504|Homo sapiens DnaJ (Hsp40) homolog, s...    58   2e-08
AL138955-1|CAH70090.1|  504|Homo sapiens DnaJ (Hsp40) homolog, s...    58   2e-08
L11369-1|AAA36418.1|  258|Homo sapiens protocadherin 42 protein.       29   8.6  

>U28424-1|AAC50502.1|  504|Homo sapiens p58 protein.
          Length = 504

 Score = 58.0 bits (134), Expect = 2e-08
 Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 6/59 (10%)
 Frame = -3

Query: 464 QLLTDPDKRSMFDSGTVPLDPEAQRAGGHGGPFNNP------FHHFQHGSPFQFKFHFN 306
           ++L+DP+ R  FD G  PLD E+Q+ GG G PF+        F+ F  G PF+FKFHFN
Sbjct: 447 EVLSDPEMRKKFDDGEDPLDAESQQGGG-GNPFHRSWNSWQGFNPFSSGGPFRFKFHFN 504


>BC047936-1|AAH47936.2|  504|Homo sapiens DnaJ (Hsp40) homolog,
           subfamily C, member 3 protein.
          Length = 504

 Score = 58.0 bits (134), Expect = 2e-08
 Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 6/59 (10%)
 Frame = -3

Query: 464 QLLTDPDKRSMFDSGTVPLDPEAQRAGGHGGPFNNP------FHHFQHGSPFQFKFHFN 306
           ++L+DP+ R  FD G  PLD E+Q+ GG G PF+        F+ F  G PF+FKFHFN
Sbjct: 447 EVLSDPEMRKKFDDGEDPLDAESQQGGG-GNPFHRSWNSWQGFNPFSSGGPFRFKFHFN 504


>AY795482-1|AAV40838.1|  504|Homo sapiens DnaJ (Hsp40) homolog,
           subfamily C, member 3 protein.
          Length = 504

 Score = 58.0 bits (134), Expect = 2e-08
 Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 6/59 (10%)
 Frame = -3

Query: 464 QLLTDPDKRSMFDSGTVPLDPEAQRAGGHGGPFNNP------FHHFQHGSPFQFKFHFN 306
           ++L+DP+ R  FD G  PLD E+Q+ GG G PF+        F+ F  G PF+FKFHFN
Sbjct: 447 EVLSDPEMRKKFDDGEDPLDAESQQGGG-GNPFHRSWNSWQGFNPFSSGGPFRFKFHFN 504


>AL138955-1|CAH70090.1|  504|Homo sapiens DnaJ (Hsp40) homolog,
           subfamily C, member 3 protein.
          Length = 504

 Score = 58.0 bits (134), Expect = 2e-08
 Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 6/59 (10%)
 Frame = -3

Query: 464 QLLTDPDKRSMFDSGTVPLDPEAQRAGGHGGPFNNP------FHHFQHGSPFQFKFHFN 306
           ++L+DP+ R  FD G  PLD E+Q+ GG G PF+        F+ F  G PF+FKFHFN
Sbjct: 447 EVLSDPEMRKKFDDGEDPLDAESQQGGG-GNPFHRSWNSWQGFNPFSSGGPFRFKFHFN 504


>L11369-1|AAA36418.1|  258|Homo sapiens protocadherin 42 protein.
          Length = 258

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -3

Query: 488 TWGYTCVVQLLTDPDKRSMFDSGTVPLDPEAQR--AGGHGGPFNNPFHHFQHGSP 330
           T+  T   Q L DP + S +DSG    +  + +  +G   GP   P  H++  +P
Sbjct: 61  TFSATSQAQELQDPSQHSYYDSGLEESETPSSKSSSGPRLGPLALPEDHYERTTP 115


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,011,111
Number of Sequences: 237096
Number of extensions: 1237794
Number of successful extensions: 2917
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2909
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4366354454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)