Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_G02
         (490 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88181-2|AAB42303.1|  491|Caenorhabditis elegans Dnaj domain (pr...    55   2e-08
AC024811-1|AAF60776.1|  494|Caenorhabditis elegans Dnaj domain (...    44   5e-05
Z92834-5|CAB07390.1|  402|Caenorhabditis elegans Hypothetical pr...    30   0.78 
AF039712-2|AAK21401.1|  401|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z81481-9|CAD54126.1|  587|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z81474-8|CAB03905.2|  587|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U39849-10|AAA81054.3|  951|Caenorhabditis elegans Glutamate rece...    27   9.7  
AF318608-1|AAK01096.1|  409|Caenorhabditis elegans ionotropic gl...    27   9.7  
AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophi...    27   9.7  

>U88181-2|AAB42303.1|  491|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 7 protein.
          Length = 491

 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 29/58 (50%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
 Frame = -3

Query: 464 QLLTDPDKRSMFDSGTVPLDPEAQRAGG--HGG---PFNNPFHHFQHGSPFQFKFHFN 306
           ++L D +KR  FD G  PLDPEAQR GG  HGG    F + FHHF  G   +  F FN
Sbjct: 432 EVLQDEEKRRQFDQGVDPLDPEAQRQGGGHHGGFGHGFPHGFHHFGGGGGGEHSFKFN 489


>AC024811-1|AAF60776.1|  494|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 28 protein.
          Length = 494

 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 21/46 (45%), Positives = 31/46 (67%)
 Frame = -3

Query: 464 QLLTDPDKRSMFDSGTVPLDPEAQRAGGHGGPFNNPFHHFQHGSPF 327
           ++L++ +KR  FD+G  PLD EA R GG GG  ++ FH+F   +PF
Sbjct: 433 EVLSNEEKRRAFDNGQDPLDSEAGRGGGGGGG-SHGFHNFHGFNPF 477


>Z92834-5|CAB07390.1|  402|Caenorhabditis elegans Hypothetical
           protein F39B2.10 protein.
          Length = 402

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 464 QLLTDPDKRSMFDSGTVPLDPEAQRAGGHGGP-FNNPFHHF 345
           ++L+D  KR ++D G      EA + GG GG  F+NPF  F
Sbjct: 53  EVLSDEKKRQIYDQG----GEEALQGGGGGGEGFHNPFDVF 89


>AF039712-2|AAK21401.1|  401|Caenorhabditis elegans Hypothetical
           protein F54D7.3 protein.
          Length = 401

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 91  LNITHSLIKLLVLPSDFIPLEKFNYFKGNVSC 186
           +NI H L+ L+V+P + +      +F G+V C
Sbjct: 63  MNIAHLLVTLVVMPKEILHNYMVAWFAGDVMC 94


>Z81481-9|CAD54126.1|  587|Caenorhabditis elegans Hypothetical
           protein C18D4.8 protein.
          Length = 587

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
 Frame = +1

Query: 328 KGLPCWKWWKGLLKGPPCPPARCASGSR--GTVP 423
           K +P WK  K       C PA C  G +  G +P
Sbjct: 548 KNMPRWKIVKNAFDSMNCVPANCVDGYKFEGVIP 581


>Z81474-8|CAB03905.2|  587|Caenorhabditis elegans Hypothetical
           protein C18D4.8 protein.
          Length = 587

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
 Frame = +1

Query: 328 KGLPCWKWWKGLLKGPPCPPARCASGSR--GTVP 423
           K +P WK  K       C PA C  G +  G +P
Sbjct: 548 KNMPRWKIVKNAFDSMNCVPANCVDGYKFEGVIP 581


>U39849-10|AAA81054.3|  951|Caenorhabditis elegans Glutamate
           receptor family (ampa)protein 4 protein.
          Length = 951

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +1

Query: 346 KWWKGLLKGPPC--PPARCASGSR 411
           KWW+   +GP C  PP+  A+ S+
Sbjct: 772 KWWRDRREGPSCGPPPSEKATNSK 795


>AF318608-1|AAK01096.1|  409|Caenorhabditis elegans ionotropic
           glutamate receptor GLR-4 protein.
          Length = 409

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +1

Query: 346 KWWKGLLKGPPC--PPARCASGSR 411
           KWW+   +GP C  PP+  A+ S+
Sbjct: 361 KWWRDRREGPSCGPPPSEKATNSK 384


>AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophila
           vasa intronic gene)ortholog protein 1, isoform a
           protein.
          Length = 378

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 395 QRAGGHGGPFNNPFH 351
           QR GGHGG  N PF+
Sbjct: 352 QRQGGHGGRNNTPFN 366


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,123,458
Number of Sequences: 27780
Number of extensions: 190334
Number of successful extensions: 455
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)