Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_G02
         (490 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    25   0.57 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   3.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   3.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.0  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 24.6 bits (51), Expect = 0.57
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 293 LTLNITSDHSEVTAIQKPPG 234
           +TLNI S  +++T I  PPG
Sbjct: 114 ITLNIESTSNKMTVILTPPG 133


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +1

Query: 94  NITHSLIKLLVLPSDFIPLEKFNYFKGNVSCI 189
           N+  S +    + S F+P+    Y  G +SC+
Sbjct: 193 NMDSSYVIFSAMGSFFLPMLVMLYVYGRISCV 224


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 225 ITNLNIVIQTRIDTRYVAFEI 163
           + N ++ IQTR D +YVA  I
Sbjct: 458 LRNEDLYIQTREDWKYVAMVI 478


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 210 YLDLLFNVTRR 242
           YLD+ FN+T R
Sbjct: 231 YLDITFNITMR 241


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 210 YLDLLFNVTRR 242
           YLD+ FN+T R
Sbjct: 231 YLDITFNITMR 241


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 210 YLDLLFNVTRR 242
           YLD+ FN+T R
Sbjct: 227 YLDITFNITMR 237



 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 125 FYLVILFH*KNSIISKATYRVSILV*ITIF 214
           F  V++F+  +    K +  +SIL+ +T+F
Sbjct: 256 FLTVLVFYLPSDSGEKVSLSISILLSLTVF 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,211
Number of Sequences: 438
Number of extensions: 2261
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)