Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_G01
(294 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 28 0.33
SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c... 27 0.43
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 26 1.0
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl... 26 1.3
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 25 2.3
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 25 2.3
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 24 4.0
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 24 4.0
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 24 5.3
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 24 5.3
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 24 5.3
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 24 5.3
SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ... 24 5.3
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po... 23 7.1
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 23 9.3
SPAC24B11.08c |||COPII-coated vesicle component Erv46|Schizosacc... 23 9.3
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 0.33
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Frame = -3
Query: 286 VVSNQLSACSFSMRR*ILGKRGLFYLPTQIAWRDYHVVSNHDETEAHFLRAS-WMVFSNL 110
VVSNQ C+FS ++ K L +LPT + V +T A ++ + + ++++
Sbjct: 391 VVSNQYGLCAFSSFLVVITKVPLHFLPTWLRHVSRIVYYMFSKTSASYVTSPLTLAYASI 450
Query: 109 HKISPQN*H*NI--*KQREEFGIMLYNIYF*KY 17
+ + N + +Q G+ + YF KY
Sbjct: 451 YSVPYMNASKALYQIEQLNRVGLRRRSYYFSKY 483
>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 429
Score = 27.5 bits (58), Expect = 0.43
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 169 LRLHDNPAMQSALEDRTVPFYPVFIFAWRNCRH 267
L+LH +A R VP Y + +R+C H
Sbjct: 11 LQLHAGQEPDAATSSRAVPIYATTSYVFRDCDH 43
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 26.2 bits (55), Expect = 1.0
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -3
Query: 223 GLFYLPTQIAWRDYHVVSNHD 161
G Y PT I R Y + SNHD
Sbjct: 158 GFVYRPTSIRDRAYSISSNHD 178
>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
Plh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 623
Score = 25.8 bits (54), Expect = 1.3
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -1
Query: 282 YPTSLVPAVSPCEDEYWVKGDCSI--FQRRLHGGIIM*SQTMTKPKHTSSEHL 130
+P +VP V E W +CSI F++RL G M + M K EHL
Sbjct: 146 HPVIMVPGVISSGLESWSFNNCSIPYFRKRLWGSWSM-LKAMFLDKQCWLEHL 197
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 25.0 bits (52), Expect = 2.3
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +1
Query: 163 HGLRLHDNPAMQSALEDRTVPFY 231
H +LH P + +A+E+ +PF+
Sbjct: 945 HTKKLHGKPLLWNAVEEYAIPFW 967
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 25.0 bits (52), Expect = 2.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 56 LFTLFLYILMLILRGNFMKV*KNHPRCSEEVCF 154
LF +F YIL+ ++ FM N PR + F
Sbjct: 641 LFLVFEYILICLIFSQFMLAMGNRPRSCRVLLF 673
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 24.2 bits (50), Expect = 4.0
Identities = 9/33 (27%), Positives = 14/33 (42%)
Frame = -3
Query: 193 WRDYHVVSNHDETEAHFLRASWMVFSNLHKISP 95
W YH + A L W F+ ++ +SP
Sbjct: 160 WASYHATKAAVKHLARALAVEWAPFARVNSVSP 192
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 24.2 bits (50), Expect = 4.0
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 117 EKTIQDARRKCASVSSWFET 176
+K+IQ+ +RKC S+ F+T
Sbjct: 953 DKSIQEFKRKCQSMEREFKT 972
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 23.8 bits (49), Expect = 5.3
Identities = 8/20 (40%), Positives = 17/20 (85%)
Frame = +1
Query: 28 NIYYIALYRTLHVVSIYFNV 87
++Y+I+LY+ ++VVS F++
Sbjct: 213 SVYWISLYKDVYVVSEIFDM 232
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 23.8 bits (49), Expect = 5.3
Identities = 8/20 (40%), Positives = 17/20 (85%)
Frame = +1
Query: 28 NIYYIALYRTLHVVSIYFNV 87
++Y+I+LY+ ++VVS F++
Sbjct: 213 SVYWISLYKDVYVVSEIFDM 232
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 23.8 bits (49), Expect = 5.3
Identities = 8/20 (40%), Positives = 17/20 (85%)
Frame = +1
Query: 28 NIYYIALYRTLHVVSIYFNV 87
++Y+I+LY+ ++VVS F++
Sbjct: 185 SVYWISLYKDVYVVSEIFDM 204
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 23.8 bits (49), Expect = 5.3
Identities = 8/20 (40%), Positives = 17/20 (85%)
Frame = +1
Query: 28 NIYYIALYRTLHVVSIYFNV 87
++Y+I+LY+ ++VVS F++
Sbjct: 213 SVYWISLYKDVYVVSEIFDM 232
>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 339
Score = 23.8 bits (49), Expect = 5.3
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +1
Query: 148 VLRFRHGLRLHDNPAMQSALEDRTVPF 228
V R HG+ + D+P + +R +PF
Sbjct: 218 VERIDHGINILDDPELIKLALERNIPF 244
>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 380
Score = 23.4 bits (48), Expect = 7.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 149 TLPPSILDGFFKPS*NFPAK 90
T+P LD FFKP + P K
Sbjct: 335 TIPQGRLDSFFKPVPSSPKK 354
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 23.0 bits (47), Expect = 9.3
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +2
Query: 221 SPFTQYSSSHG 253
+PF+ YSSSHG
Sbjct: 393 TPFSAYSSSHG 403
>SPAC24B11.08c |||COPII-coated vesicle component
Erv46|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 23.0 bits (47), Expect = 9.3
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 114 FEKTIQDARRKCAS 155
F+KT++DAR K AS
Sbjct: 13 FQKTVEDARIKTAS 26
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,408,141
Number of Sequences: 5004
Number of extensions: 28587
Number of successful extensions: 75
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -