Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_G01
(294 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0783 + 5835517-5835861,5835989-5836060,5836140-5836220,583... 34 0.017
08_02_0580 - 18953208-18953513,18953668-18953868,18953929-189540... 29 0.65
08_02_1559 - 27873345-27873407,27873549-27873830,27874162-278742... 27 2.0
09_06_0061 + 20596360-20596618,20597039-20597158,20597329-205974... 27 2.6
04_04_0072 + 22524974-22525310,22526334-22526552,22526826-225275... 27 2.6
09_06_0308 - 22199389-22199451,22199604-22199924,22200178-222004... 27 3.5
11_03_0187 - 11334733-11334802,11334975-11335055,11336087-113361... 26 4.6
02_04_0317 + 21996324-21996681,21996833-21996859,21997299-219982... 26 4.6
12_01_0951 - 9471391-9471597,9471857-9471966,9473173-9473278,947... 25 8.0
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159... 25 8.0
>02_01_0783 +
5835517-5835861,5835989-5836060,5836140-5836220,
5836293-5836490,5836576-5836647,5836803-5836889,
5836986-5837084,5837191-5837274,5837351-5837437,
5837578-5837649,5837912-5838025,5838127-5838214,
5838293-5838388,5838507-5838694
Length = 560
Score = 34.3 bits (75), Expect = 0.017
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 157 FRHGLRLHDNPAMQSALE-DRTVPFYPVFIFAWRNCR 264
FR GLR+HDNPA+ +A YPVF+ R R
Sbjct: 19 FRKGLRVHDNPALDAARRGGAAARLYPVFVLDPRYLR 55
>08_02_0580 -
18953208-18953513,18953668-18953868,18953929-18954009,
18954096-18954410,18954493-18954636,18954733-18954822,
18954907-18954983,18955122-18955182,18955264-18955490,
18955581-18955740,18955825-18956025,18956114-18956209,
18956380-18956565,18956641-18956810,18957044-18957275,
18958652-18959029
Length = 974
Score = 29.1 bits (62), Expect = 0.65
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -1
Query: 279 PTSLV-PAVSPCEDEYWVKGDCSIF 208
P +LV P + PCED+Y+V+ C F
Sbjct: 69 PAALVAPPIPPCEDKYFVREPCYDF 93
>08_02_1559 -
27873345-27873407,27873549-27873830,27874162-27874263,
27874402-27874872
Length = 305
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 197 NLRWKIEQSPFTQYSSSHGETAGTKLVGYNR 289
NL W+++ S Q S HGE +V Y+R
Sbjct: 227 NLPWQVDDSRLLQLFSEHGEVVNASVV-YDR 256
>09_06_0061 +
20596360-20596618,20597039-20597158,20597329-20597462,
20597578-20597730,20597816-20597927,20598022-20598352,
20598524-20598737,20598842-20598931,20599669-20599924,
20600029-20600141,20600733-20600831,20600915-20600980,
20601018-20601167,20601278-20601368,20601710-20601749,
20603888-20605247,20605478-20605507,20605834-20605885,
20606264-20606397,20606513-20606665,20607089-20607202
Length = 1356
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/35 (31%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +1
Query: 145 SVLRFRHGLRLHDNPAMQSAL-EDRTVPFYPVFIF 246
+V+ F+H LR+ D+P + +A+ + P P+++F
Sbjct: 46 AVVWFKHDLRVDDHPGLAAAVAAEPRRPVLPLYVF 80
>04_04_0072 +
22524974-22525310,22526334-22526552,22526826-22527532,
22527664-22528482
Length = 693
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 139 GGSVLRFRHGLRLHDNPAMQSALE--DRTVPFY 231
G +V+ FR LR+ DNPA+ +A VP Y
Sbjct: 11 GRTVVWFRRDLRVEDNPALAAAARAGGEVVPAY 43
>09_06_0308 -
22199389-22199451,22199604-22199924,22200178-22200423,
22202152-22203337,22203487-22203551,22204205-22204486,
22205005-22205106,22205587-22206105
Length = 927
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 197 NLRWKIEQSPFTQYSSSHGETAGTKLVGYNR 289
NL W+++ S Q S HG+ ++V Y+R
Sbjct: 243 NLPWQVDDSRLVQLFSEHGKVVDARVV-YDR 272
>11_03_0187 -
11334733-11334802,11334975-11335055,11336087-11336155,
11337282-11337601
Length = 179
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -1
Query: 138 EHLGWFFQTFIKFPRKINIKIYRNNVKSSV*CYIIYIFKSTIT 10
E LG +FQ+ +FP+K +I +++ V + C I +F T
Sbjct: 102 EALGQWFQSIYRFPKKKSICRFQSVVFTIRKCIIHVVFLKNCT 144
>02_04_0317 +
21996324-21996681,21996833-21996859,21997299-21998227,
21998317-21999162
Length = 719
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 145 SVLRFRHGLRLHDNPAMQSALEDRTVPFYPVFIFA 249
+V+ FR LR+ DNPA+ +A PV+++A
Sbjct: 20 TVVWFRRDLRVEDNPALAAAAR-AAGEVVPVYVWA 53
>12_01_0951 -
9471391-9471597,9471857-9471966,9473173-9473278,
9474719-9475060,9475598-9475647,9476745-9477717
Length = 595
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 78 IYRNNVKSSV*CYIIYIFKST 16
++ NVK SV Y IYIFK T
Sbjct: 509 LHTQNVKWSVETYKIYIFKGT 529
>07_01_0214 +
1595917-1596526,1597127-1597140,1598414-1598743,
1598853-1598963,1599113-1599269,1603366-1603619,
1603762-1603960,1604341-1604498
Length = 610
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 94 AGKFYEGLKKPSKMLGGSVLRFRH-GLRLHDNPAMQSALEDR 216
AG+ ++KPS M GG+ R+R G R + + +E R
Sbjct: 114 AGRLGRQIRKPSLMRGGTGRRWREKGRRREEGEGWERGVERR 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,775,895
Number of Sequences: 37544
Number of extensions: 174625
Number of successful extensions: 334
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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