Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_G01
         (294 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051514-1|AAK92938.1|  542|Drosophila melanogaster GH16672p pro...    48   2e-06
AF099734-1|AAC83828.1|  542|Drosophila melanogaster cryptochrome...    48   2e-06
AE014297-2641|AAF55649.1|  542|Drosophila melanogaster CG3772-PA...    48   2e-06
AB019389-1|BAA35000.1|  542|Drosophila melanogaster blue light p...    48   2e-06
AB018400-1|BAA33787.1|  542|Drosophila melanogaster blue-light r...    48   2e-06
D83701-1|BAA12067.1|  540|Drosophila melanogaster photolyase pro...    29   1.0  
AY089584-1|AAL90322.1|  540|Drosophila melanogaster RE11660p pro...    29   1.0  
AE014134-3257|AAF53904.1|  540|Drosophila melanogaster CG2488-PB...    29   1.0  
AE014134-3256|AAN11080.1|  540|Drosophila melanogaster CG2488-PA...    29   1.0  
BT001813-1|AAN71568.1|  316|Drosophila melanogaster RH35959p pro...    26   7.1  
AY061202-1|AAL28750.1|  389|Drosophila melanogaster LD15586p pro...    26   7.1  
AE013599-3535|AAM68234.1|  316|Drosophila melanogaster CG3082-PD...    26   7.1  
AE013599-3534|AAF46949.2|  389|Drosophila melanogaster CG3082-PC...    26   7.1  
AE013599-3533|AAF46948.1|  389|Drosophila melanogaster CG3082-PB...    26   7.1  
AE013599-3532|AAF46947.1|  389|Drosophila melanogaster CG3082-PA...    26   7.1  
AE014134-2372|AAF53315.1|  201|Drosophila melanogaster CG9263-PA...    26   9.4  

>AY051514-1|AAK92938.1|  542|Drosophila melanogaster GH16672p
           protein.
          Length = 542

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 22/38 (57%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
 Frame = +1

Query: 139 GGSVLRFRHGLRLHDNPAMQSAL--EDRTVPFYPVFIF 246
           G +V+ FRHGLRLHDNPA+ +AL  +D+ +   PVFIF
Sbjct: 5   GANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIF 42



 Score = 29.1 bits (62), Expect = 1.0
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +2

Query: 251 GETAGTKLVGYNRM 292
           GE+AGTK VGYNRM
Sbjct: 44  GESAGTKNVGYNRM 57


>AF099734-1|AAC83828.1|  542|Drosophila melanogaster cryptochrome
           protein.
          Length = 542

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 22/38 (57%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
 Frame = +1

Query: 139 GGSVLRFRHGLRLHDNPAMQSAL--EDRTVPFYPVFIF 246
           G +V+ FRHGLRLHDNPA+ +AL  +D+ +   PVFIF
Sbjct: 5   GANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIF 42



 Score = 29.1 bits (62), Expect = 1.0
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +2

Query: 251 GETAGTKLVGYNRM 292
           GE+AGTK VGYNRM
Sbjct: 44  GESAGTKNVGYNRM 57


>AE014297-2641|AAF55649.1|  542|Drosophila melanogaster CG3772-PA
           protein.
          Length = 542

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 22/38 (57%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
 Frame = +1

Query: 139 GGSVLRFRHGLRLHDNPAMQSAL--EDRTVPFYPVFIF 246
           G +V+ FRHGLRLHDNPA+ +AL  +D+ +   PVFIF
Sbjct: 5   GANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIF 42



 Score = 29.1 bits (62), Expect = 1.0
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +2

Query: 251 GETAGTKLVGYNRM 292
           GE+AGTK VGYNRM
Sbjct: 44  GESAGTKNVGYNRM 57


>AB019389-1|BAA35000.1|  542|Drosophila melanogaster blue light
           photoreceptor protein.
          Length = 542

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 22/38 (57%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
 Frame = +1

Query: 139 GGSVLRFRHGLRLHDNPAMQSAL--EDRTVPFYPVFIF 246
           G +V+ FRHGLRLHDNPA+ +AL  +D+ +   PVFIF
Sbjct: 5   GANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIF 42



 Score = 29.1 bits (62), Expect = 1.0
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +2

Query: 251 GETAGTKLVGYNRM 292
           GE+AGTK VGYNRM
Sbjct: 44  GESAGTKNVGYNRM 57


>AB018400-1|BAA33787.1|  542|Drosophila melanogaster blue-light
           receptor protein.
          Length = 542

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 22/38 (57%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
 Frame = +1

Query: 139 GGSVLRFRHGLRLHDNPAMQSAL--EDRTVPFYPVFIF 246
           G +V+ FRHGLRLHDNPA+ +AL  +D+ +   PVFIF
Sbjct: 5   GANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIF 42



 Score = 29.1 bits (62), Expect = 1.0
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +2

Query: 251 GETAGTKLVGYNRM 292
           GE+AGTK VGYNRM
Sbjct: 44  GESAGTKNVGYNRM 57


>D83701-1|BAA12067.1|  540|Drosophila melanogaster photolyase
           protein.
          Length = 540

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +1

Query: 157 FRHGLRLHDNPAM 195
           FR GLRLHDNPA+
Sbjct: 12  FRKGLRLHDNPAL 24


>AY089584-1|AAL90322.1|  540|Drosophila melanogaster RE11660p
           protein.
          Length = 540

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +1

Query: 157 FRHGLRLHDNPAM 195
           FR GLRLHDNPA+
Sbjct: 12  FRKGLRLHDNPAL 24


>AE014134-3257|AAF53904.1|  540|Drosophila melanogaster CG2488-PB,
           isoform B protein.
          Length = 540

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +1

Query: 157 FRHGLRLHDNPAM 195
           FR GLRLHDNPA+
Sbjct: 12  FRKGLRLHDNPAL 24


>AE014134-3256|AAN11080.1|  540|Drosophila melanogaster CG2488-PA,
           isoform A protein.
          Length = 540

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +1

Query: 157 FRHGLRLHDNPAM 195
           FR GLRLHDNPA+
Sbjct: 12  FRKGLRLHDNPAL 24


>BT001813-1|AAN71568.1|  316|Drosophila melanogaster RH35959p
           protein.
          Length = 316

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 184 YHVVSNHDETEAHFLRASWMVFSNLHK 104
           YH+ + H++   H++R+S M  S L K
Sbjct: 211 YHLKTFHNQATIHYMRSSQMFHSTLLK 237


>AY061202-1|AAL28750.1|  389|Drosophila melanogaster LD15586p
           protein.
          Length = 389

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 184 YHVVSNHDETEAHFLRASWMVFSNLHK 104
           YH+ + H++   H++R+S M  S L K
Sbjct: 284 YHLKTFHNQATIHYMRSSQMFHSTLLK 310


>AE013599-3535|AAM68234.1|  316|Drosophila melanogaster CG3082-PD,
           isoform D protein.
          Length = 316

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 184 YHVVSNHDETEAHFLRASWMVFSNLHK 104
           YH+ + H++   H++R+S M  S L K
Sbjct: 211 YHLKTFHNQATIHYMRSSQMFHSTLLK 237


>AE013599-3534|AAF46949.2|  389|Drosophila melanogaster CG3082-PC,
           isoform C protein.
          Length = 389

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 184 YHVVSNHDETEAHFLRASWMVFSNLHK 104
           YH+ + H++   H++R+S M  S L K
Sbjct: 284 YHLKTFHNQATIHYMRSSQMFHSTLLK 310


>AE013599-3533|AAF46948.1|  389|Drosophila melanogaster CG3082-PB,
           isoform B protein.
          Length = 389

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 184 YHVVSNHDETEAHFLRASWMVFSNLHK 104
           YH+ + H++   H++R+S M  S L K
Sbjct: 284 YHLKTFHNQATIHYMRSSQMFHSTLLK 310


>AE013599-3532|AAF46947.1|  389|Drosophila melanogaster CG3082-PA,
           isoform A protein.
          Length = 389

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 184 YHVVSNHDETEAHFLRASWMVFSNLHK 104
           YH+ + H++   H++R+S M  S L K
Sbjct: 284 YHLKTFHNQATIHYMRSSQMFHSTLLK 310


>AE014134-2372|AAF53315.1|  201|Drosophila melanogaster CG9263-PA
           protein.
          Length = 201

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 294 RIRLYPTSLVPAVSPCE 244
           RIR+ P    PA++PCE
Sbjct: 130 RIRVCPVDFAPALAPCE 146


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,442,769
Number of Sequences: 53049
Number of extensions: 285832
Number of successful extensions: 515
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 24,988,368
effective HSP length: 73
effective length of database: 21,115,791
effective search space used: 506778984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)