Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_G01
         (294 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ...    31   0.19 
U64846-8|AAG24109.1|  331|Caenorhabditis elegans Serpentine rece...    29   0.44 
U64846-6|AAG24115.3|  336|Caenorhabditis elegans Serpentine rece...    29   0.44 
AC024831-6|AAY86308.1|  351|Caenorhabditis elegans Hypothetical ...    29   0.58 
AC006675-11|AAK84552.1|  326|Caenorhabditis elegans Serpentine r...    27   2.3  
Z81038-9|CAB02765.1|  189|Caenorhabditis elegans Hypothetical pr...    26   4.1  
U80441-11|AAB37660.3| 1037|Caenorhabditis elegans Hypothetical p...    26   5.4  
Z83237-6|CAE17879.1|  549|Caenorhabditis elegans Hypothetical pr...    25   7.1  
U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical p...    25   7.1  
U50300-5|AAC48103.2|  337|Caenorhabditis elegans Serpentine rece...    25   7.1  
AF024503-16|AAG24086.2|  287|Caenorhabditis elegans Serpentine r...    25   9.4  

>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.2 protein.
          Length = 1594

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -2

Query: 284 CIQPA*CLQFLHAK--MNTG*KGTVLSSNADCMAGLSCSLKP*RNRST 147
           C+ PA  +Q  H++    +G  G V S N DC+ G+ C++   R  ST
Sbjct: 95  CVDPA--MQVFHSQGTSGSGRVGDVCSFNTDCLGGMFCAIGQCRCLST 140


>U64846-8|AAG24109.1|  331|Caenorhabditis elegans Serpentine
           receptor, class t protein19 protein.
          Length = 331

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -1

Query: 165 MTKPKHTSSEHLGWFFQTFI-KFPR-KINIKIYRNNVKSSV*CYIIYIFKSTITF 7
           +TKP   +  H+ WFF   + K P   +N+    NN+  ++   + Y F S + F
Sbjct: 179 LTKPVIFTPTHMSWFFDPMVGKNPEFYVNLPHTYNNIIMAICTIVFYGFLSYLAF 233


>U64846-6|AAG24115.3|  336|Caenorhabditis elegans Serpentine
           receptor, class t protein20 protein.
          Length = 336

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -1

Query: 165 MTKPKHTSSEHLGWFFQTFI-KFPR-KINIKIYRNNVKSSV*CYIIYIFKSTITF 7
           +TKP   +  H+ WFF   + K P   +N+    NN+  ++   + Y F S + F
Sbjct: 179 LTKPVIFTPTHMSWFFDPMVGKNPEFYVNLPHTYNNIIMAICTIVFYGFLSYLAF 233


>AC024831-6|AAY86308.1|  351|Caenorhabditis elegans Hypothetical
           protein Y55F3C.10 protein.
          Length = 351

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = -1

Query: 162 TKPKHTSSEHLGWFFQTFI---KFPRKINIKIYRNNVKSSV*CYIIYIFKSTITF 7
           TKP   +S ++ WFF   I   + P  INI    NN   S+    IY +   I F
Sbjct: 173 TKPLLFNSNYMSWFFNPMIPGNEAPNYINISHTVNNCVVSLATTAIYSYLCVILF 227


>AC006675-11|AAK84552.1|  326|Caenorhabditis elegans Serpentine
           receptor, class t protein31 protein.
          Length = 326

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 162 TKPKHTSSEHLGWFFQTFI 106
           T P   SS++LGWFF  FI
Sbjct: 170 TPPLLYSSKYLGWFFDPFI 188


>Z81038-9|CAB02765.1|  189|Caenorhabditis elegans Hypothetical
           protein C25A1.13 protein.
          Length = 189

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -1

Query: 159 KPKHTSSEHL--GWFFQTFIKFPRKINIKIYRNNV 61
           KP +T+++ L  GW F  F+K P    I  Y N +
Sbjct: 11  KPIYTAAKALNFGWRFSDFLKIPAYNGISRYTNQL 45


>U80441-11|AAB37660.3| 1037|Caenorhabditis elegans Hypothetical
           protein F27C1.11 protein.
          Length = 1037

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 40  IALYRTLHVVSIYFNVNFAGKFYEGLKKPSKM 135
           I  +RT+    + F +N  GKF+  L  P KM
Sbjct: 17  IHAFRTVSAKEVLFVLNGRGKFHRELINPMKM 48


>Z83237-6|CAE17879.1|  549|Caenorhabditis elegans Hypothetical
           protein R06B9.6 protein.
          Length = 549

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -3

Query: 223 GLFYLPTQIAWRDYHVVSNHDETEAHFLRASWMVFSNLHKIS 98
           G +Y P+  ++ ++ +++  DET+   L   W+   N  +IS
Sbjct: 33  GAWYAPSPSSYMEFEMITCRDETKG--LSGEWIHRDNCQQIS 72


>U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical
            protein C32E8.11 protein.
          Length = 1927

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
 Frame = +1

Query: 46   LYRTLHVVSIYFNVN-FAGKFYEGLKKPSKMLGGSVLRFR-HGLRLHDNPAMQSALEDRT 219
            LY  +       N N      +EG ++P K LG ++++FR  G  L  N        ++ 
Sbjct: 1431 LYSLIRPFPALINSNRICSSSFEGFEEPIKDLGKNMMKFRKRGNELKTN------FIEKH 1484

Query: 220  VPFYPVFIFAWRNCRH*AGWIQPY 291
            +  Y +    W++  H A  I  Y
Sbjct: 1485 LKGYVISTVTWQSTAHVARAISSY 1508


>U50300-5|AAC48103.2|  337|Caenorhabditis elegans Serpentine
           receptor, class t protein18 protein.
          Length = 337

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -1

Query: 162 TKPKHTSSEHLGWFFQTFIKFPRKINIKIYR--NNVKSSV*CYIIY 31
           TKP   +  H+ WFF   +     + + IY   NN+  S+ C +++
Sbjct: 187 TKPIIFNLTHMSWFFDPGVGKDPNLYVNIYHIFNNMMVSI-CTVLF 231


>AF024503-16|AAG24086.2|  287|Caenorhabditis elegans Serpentine
           receptor, class x protein23 protein.
          Length = 287

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 56  LFTLFLYILMLILRGNFMKV*KNHPRCSEEVCFGFVMV 169
           LF L     M  + G+F  + KNH  C+  +C  +V+V
Sbjct: 23  LFVLAAARNMSSMNGSFGIITKNHAICNLTMCLLYVLV 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,639,480
Number of Sequences: 27780
Number of extensions: 155934
Number of successful extensions: 354
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)