Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_G01
         (294 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     30   0.005
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   1.8  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    22   1.8  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    22   1.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   2.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    20   5.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    20   7.3  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    20   7.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    19   9.6  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 30.3 bits (65), Expect = 0.005
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +1

Query: 157 FRHGLRLHDNPAMQSALEDRTVPFYPVFI 243
           FR GLRLHDNP+++  L   +  F  VF+
Sbjct: 27  FRKGLRLHDNPSLREGLAGAST-FRCVFV 54



 Score = 19.4 bits (38), Expect = 9.6
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -3

Query: 154 EAHFLRASWMVFSNLHKISPQN 89
           E H  R +W+      K++PQ+
Sbjct: 240 ERHLERKAWVASFGRPKMTPQS 261


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +2

Query: 2   KLKVMVLLKIYII*HYTELFTLFLYILMLILRGNFMKV*KNHPRCSEEVCFGFV 163
           KL V ++     +     +   ++YILM ILR +     +N   CS      F+
Sbjct: 75  KLAVFIVAGAVGVFSVLTILISYIYILMAILRMSADGGCRNFSTCSSHPTAAFI 128


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 282 YPTSLVPAVSPCEDEYWVKGD 220
           Y   L+P + PC DE  +  D
Sbjct: 29  YMEYLMPDIMPCADELHISED 49


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 282 YPTSLVPAVSPCEDEYWVKGD 220
           Y   L+P + PC DE  +  D
Sbjct: 29  YMEYLMPDIMPCADELHISED 49


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 2.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 93  KINIKIYRNNVKSSV 49
           KIN +I++ NVK +V
Sbjct: 516 KINYRIFKANVKEAV 530


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.2 bits (40), Expect = 5.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 96  RKINIKIYRNNVKSSV*CYIIYIFKSTITFNF 1
           +K+N+   R+N  +S     I I K+ IT  F
Sbjct: 250 KKMNVDSLRSNANTSSQSAEIRIAKAAITICF 281


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 173 DYMIIPPCNLRWKIEQSPFTQ 235
           DY I    N  WK E+  F+Q
Sbjct: 81  DYTITMYLNQYWKDERLAFSQ 101


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 9/30 (30%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 4   VKSYGTFKNIYYIALY-RTLHVVSIYFNVN 90
           +++YG   N  Y+ALY  ++ V+++   V+
Sbjct: 208 LRNYGRRINCTYVALYPSSVQVIALGVGVS 237


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 185 IPPCNLRWKIEQSP 226
           I P   R K+EQSP
Sbjct: 197 ITPAKKRIKLEQSP 210


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,340
Number of Sequences: 438
Number of extensions: 2047
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5994288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)