Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F24
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual             27   1.5  
SPCC16C4.20c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   2.5  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    27   2.5  
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    26   4.4  
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    25   7.7  

>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 484

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +1

Query: 16  CTYHP--KNHYNDTFAKNCGSIASL 84
           CT++P      NDT  KNC SI SL
Sbjct: 355 CTFNPIFDELVNDTSTKNCSSIGSL 379


>SPCC16C4.20c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 77

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 48  YVRKELRIDRFLKLIICTCEFNIVRIYNMHR 140
           Y RK  RI R +  I   CE   V+IYN+ R
Sbjct: 17  YRRKTARIRRKVSEIEKECEMYAVKIYNVER 47


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -3

Query: 342 TISHKAPPRLHDI--DCQIRKFNELKENDCYMTDRDPAKNSQLY*TTTNSTAFKHP 181
           ++ H  PP   +I  D + +K  ELK    ++ + DP K ++       S+A K P
Sbjct: 157 SLQHALPPEHRNIWFDMEKQKKEELKNKHSWLYNEDPFKAAKELQAARASSAAKPP 212


>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 244 RPRQKLPVILNNDQFNSIQTS*DRIIIRH 158
           R R++ PV++ N   N I +  DR+++RH
Sbjct: 103 RGRKEKPVVIVNAAENDIGSFKDRLLLRH 131


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +1

Query: 7   GYICTYHPKNHYNDTFAKNC-GSIASL 84
           GYI +Y P N  +DT    C GS  SL
Sbjct: 90  GYISSYIPSNRVDDTVCDCCDGSDESL 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,259,722
Number of Sequences: 5004
Number of extensions: 42005
Number of successful extensions: 71
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)