Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F24
         (566 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406...    30   1.1  
03_01_0301 - 2357324-2358861,2359553-2359661                           28   6.0  

>08_01_0461 -
           4063614-4064375,4064439-4066017,4066041-4066086,
           4066416-4066933,4067435-4067694,4068089-4068594,
           4068667-4071319
          Length = 2107

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 166 IRHIMIGSMRCIL*-ILTILNSQVQIINLRKRSIRNSLRTYRYNGFWDDMCK 14
           IR I I S  C+L  ILT +   V  +N+R+     SL T  YNG   ++CK
Sbjct: 304 IRDISILSRLCLLRGILTAIPRTV--LNMRQLHSNGSLWTMLYNGILPELCK 353


>03_01_0301 - 2357324-2358861,2359553-2359661
          Length = 548

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -3

Query: 399 LKNICYALSSIINLQQIK*TISHKAP 322
           LKN   +LSS+ NL+QIK  I H  P
Sbjct: 229 LKNFDSSLSSMPNLEQIKALIEHYGP 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,651,642
Number of Sequences: 37544
Number of extensions: 233105
Number of successful extensions: 373
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)