Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F23
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_07_0010 - 27334177-27334337,27334479-27334560                       30   1.1  
09_02_0271 + 6540287-6540368,6540510-6540670                           30   1.1  
07_01_0657 - 4915264-4915386,4915586-4915714,4917773-4917859,491...    28   3.4  
04_04_0432 + 25157722-25157950,25158045-25158659,25159298-251593...    28   3.4  

>11_07_0010 - 27334177-27334337,27334479-27334560
          Length = 80

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = +3

Query: 18  VWSVIVLLCLIIFVKADV-KCRSDEYT---PGPNCGLEPTCAPRSSHSYPKHTCDC 173
           ++S+ V +C++  V + +  C  DE T     P+C +        +H +PK+T  C
Sbjct: 5   LYSIAVAVCIVFVVMSTIPSCYGDEETFTDEVPHCKIVACTNKCRTHHHPKYTARC 60


>09_02_0271 + 6540287-6540368,6540510-6540670
          Length = 80

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = +3

Query: 18  VWSVIVLLCLIIFVKADV-KCRSDEYT---PGPNCGLEPTCAPRSSHSYPKHTCDC 173
           ++S+ V +C++  V + +  C  DE T     P+C +        +H +PK+T  C
Sbjct: 5   LYSIAVAVCIVFVVMSTIPSCYGDEETFTDEVPHCKIVACTNKCRTHHHPKYTARC 60


>07_01_0657 -
           4915264-4915386,4915586-4915714,4917773-4917859,
           4918220-4918368,4918498-4918555,4918632-4920614,
           4922064-4922123
          Length = 862

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 36  LLCLIIFVKADVKCRSDEYTPGPNCGLEPTCAPRSSHS 149
           ++C++     ++ C  D +TPGP      TC   S H+
Sbjct: 471 IVCILNTEDPEIPCNDDIFTPGPVASTS-TCDQNSQHN 507


>04_04_0432 +
           25157722-25157950,25158045-25158659,25159298-25159380,
           25159906-25159979,25160101-25160151,25160295-25160371,
           25160856-25161595
          Length = 622

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +3

Query: 129 APRSSHSYPKH-TCDCWCKPGTYRVIDTNDCVT-LEHCH 239
           AP + H YP +     WCKP    VI    C T L+H H
Sbjct: 472 APLAVH-YPSYGQASGWCKPEQDAVIAAGHCATDLQHLH 509


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,228,397
Number of Sequences: 37544
Number of extensions: 175303
Number of successful extensions: 404
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)