Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F22
         (388 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    30   0.15 
SPAC212.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    28   0.59 
SPBCPT2R1.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   0.59 
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    26   2.4  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   4.1  
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc...    25   4.1  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   5.5  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    24   7.2  

>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 29.9 bits (64), Expect = 0.15
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -2

Query: 126 LSNGKLLSTSKLLYISTGLFFHTPTCHTKSDKQNT 22
           LSNG LLSTS  L  ++G F       T S + NT
Sbjct: 73  LSNGTLLSTSSPLISTSGQFTSNNVSTTSSQRHNT 107


>SPAC212.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 98  DVLNSLPLDKKRSQFTNGYKSCN 166
           DVLN LPL KKR ++T    S N
Sbjct: 65  DVLNGLPLLKKRDRYTTQCHSTN 87


>SPBCPT2R1.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 98  DVLNSLPLDKKRSQFTNGYKSCN 166
           DVLN LPL KKR ++T    S N
Sbjct: 65  DVLNGLPLLKKRDRYTTQCHSTN 87


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 95  NYYILVLDYFSTLPLVIQNPINKTQLYFMS 6
           N   L L YF T+PL +Q  I KT   F++
Sbjct: 340 NVVELRLKYFDTVPLAVQLNILKTGFLFVA 369


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = -2

Query: 231  EAESSLDVVRF*TVPM-LMWCRSLQLLYPFVNW---LLFLSNGKLLSTSKLLYISTGL 70
            + E    +V F TVP  L+WC S+QL     +W   ++    G+L+  SK   +  GL
Sbjct: 1376 KTEGDAFMVCFQTVPAALLWCFSVQLQLLSADWPNEIVESVQGRLVLGSKNEVLYRGL 1433


>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
           oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 195 TVPMLMWCRSLQLLYPFVNWLLFLSNGKLLSTSKLL 88
           TVP  M+    +  +PFV W   + NGK   +  L+
Sbjct: 417 TVPRRMFYHLKKDFFPFVYWNFAVRNGKWYGSRGLI 452


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +2

Query: 80  LIYSNLDVLNSLPLDKKRSQFTNGYKSCNERHH 178
           ++YS+L +   +  DK+     N ++  N+R H
Sbjct: 578 IVYSDLPLTLMITCDKENDHVINRFRLANDRIH 610


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 186 MLMWCRSLQLLYPFVNWLLFLSNGKLLSTSKLLYISTGLFFHT 58
           M+ W +S     PF +WLL +    LL T  L ++ + + F +
Sbjct: 420 MVFWSKSSSSTVPFSSWLLLIFL-YLLFTVPLSFVGSLIGFRS 461


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,531,559
Number of Sequences: 5004
Number of extensions: 27380
Number of successful extensions: 74
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)