Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F22
         (388 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0491 - 22680011-22680125,22680210-22680307,22680392-226804...    29   0.97 
04_04_0585 - 26386248-26386271,26386510-26386699,26387363-263874...    27   3.9  
01_01_0255 + 2079112-2079196,2079334-2079514,2079712-2079853,207...    27   3.9  
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648...    27   6.9  
01_07_0359 - 43042675-43042758,43042956-43043024,43043099-430431...    27   6.9  

>01_05_0491 -
           22680011-22680125,22680210-22680307,22680392-22680472,
           22680564-22680677,22680757-22680823,22680947-22681017,
           22681099-22681236,22681324-22681530,22681630-22681773,
           22681856-22682017,22682117-22682173,22682256-22682348,
           22682425-22682542,22682678-22682817,22683031-22683590,
           22683703-22683805
          Length = 755

 Score = 29.5 bits (63), Expect = 0.97
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 222 SSLDVVRF*TVPMLMWCRSLQLLYPFVNWLLFLSNGK 112
           +SL+V++   VP  + C+    L+ F+N  LF SNG+
Sbjct: 565 NSLNVLKSNYVPPFLICKLFTQLFSFINVQLFNSNGE 601


>04_04_0585 - 26386248-26386271,26386510-26386699,26387363-26387463,
            26387554-26387685,26387759-26387857,26387956-26388127,
            26388217-26388512,26388601-26388726,26388848-26389062,
            26389154-26389225,26389299-26389368,26389441-26389517,
            26389605-26389923,26390034-26390225,26390321-26390551,
            26390585-26390950,26392251-26392313,26392394-26392456,
            26392544-26392642,26393497-26393523,26394299-26394358,
            26395230-26396147,26396243-26397268
          Length = 1645

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 50   QVGVWKNNPVLIYSNLD 100
            ++  WKNN + +YSNLD
Sbjct: 977  RISHWKNNMITLYSNLD 993


>01_01_0255 +
           2079112-2079196,2079334-2079514,2079712-2079853,
           2079934-2080003,2080140-2080303
          Length = 213

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -3

Query: 218 RLTWCVFKQSQC*CGAVHYNFCIHL*TGFFFYPMANC*AHLNYYILVLDYFSTLPLVIQN 39
           RLTW V +     CG     F + + + F    +A+C + L    LV+    TLP++ +N
Sbjct: 114 RLTWFVHRLYDIACGKDIKMFILTVFSLFIASVIASCFSSLTLLYLVVLGTMTLPVMYEN 173


>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
            31165816-31167650,31169294-31169424,31169993-31170075,
            31170426-31170680,31171125-31171220,31171695-31171775,
            31171811-31171968,31172434-31172534,31172614-31172629,
            31173390-31173439,31174558-31174588,31175156-31175305,
            31176135-31176173,31176288-31176410,31176496-31176552,
            31176837-31176911,31177003-31177107
          Length = 1496

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 114  CHWIKKEASLQMDTKVVMNGTTST 185
            C W    ASL +DTKVV   T+ T
Sbjct: 1363 CKWSGNHASLLVDTKVVEVSTSKT 1386


>01_07_0359 - 43042675-43042758,43042956-43043024,43043099-43043159,
            43043260-43043768,43044545-43045153,43045697-43045972,
            43046581-43046769,43047006-43047116,43047621-43047908,
            43047990-43048041,43048648-43048824,43049249-43049314,
            43049675-43049929,43050071-43050577,43050807-43050886,
            43050974-43051207
          Length = 1188

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = -2

Query: 195  TVPMLMWCRSLQLLYPFVNWLLFLSNGKLLSTSKLLYISTGLFFHTPTCHTK 40
            ++P+ + C  L+  + F+ W       K L   KLL     +  HT   H+K
Sbjct: 864  SLPVCLLCGLLKSKHNFIRWGFLYVLDKFLMRCKLLLDDNDMQEHTVADHSK 915


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,223,466
Number of Sequences: 37544
Number of extensions: 153299
Number of successful extensions: 312
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)