Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F22
         (388 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099505-1|AAF00091.1|  392|Homo sapiens colon carcinoma related...    30   3.0  
AF156100-1|AAK68690.1| 5636|Homo sapiens hemicentin protein.           28   9.1  

>AF099505-1|AAF00091.1|  392|Homo sapiens colon carcinoma related
           protein protein.
          Length = 392

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = -3

Query: 176 GAVHYNFCIHL*TGFFFYPMANC*AHLNYYILVLDYFSTLPLVIQNPINKTQLYFMSA 3
           G   +N C+ +  G + + + NC   +  ++ +   F  + +V+QNP     L  MS+
Sbjct: 57  GVASHNVCVGICVGVYLHSLNNC--MIRKFLSLFQMFHVVIIVLQNPKGYVLLMKMSS 112


>AF156100-1|AAK68690.1| 5636|Homo sapiens hemicentin protein.
          Length = 5636

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 174  CRSLQLLYPFVNWLLFLSNGKLLSTSKLLYISTGLFFHTP 55
            C++  L  P + W  +     ++S+S+ LYI  G + H P
Sbjct: 1569 CKTRGLPMPAITW--YKDGQPIMSSSQALYIDKGQYLHIP 1606


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,883,296
Number of Sequences: 237096
Number of extensions: 960466
Number of successful extensions: 1451
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1451
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2641190740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)