Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F22
         (388 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40959-2|AAA81766.1|  413|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z49074-2|CAE48829.1|  807|Caenorhabditis elegans Hypothetical pr...    28   2.6  
Z49074-1|CAA88893.3|  771|Caenorhabditis elegans Hypothetical pr...    28   2.6  
Z49073-9|CAE48845.1|  807|Caenorhabditis elegans Hypothetical pr...    28   2.6  
Z49073-8|CAA88892.3|  771|Caenorhabditis elegans Hypothetical pr...    28   2.6  
AL031627-22|CAI79188.1|  213|Caenorhabditis elegans Hypothetical...    27   6.1  

>U40959-2|AAA81766.1|  413|Caenorhabditis elegans Hypothetical
           protein B0310.2 protein.
          Length = 413

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 96  KLLYISTGLFFHT-PTCHTKSDKQNTTLLHER 4
           K ++I TGL  HT P CH K ++++  L H++
Sbjct: 325 KHMFIHTGLRPHTCPHCHKKFNRKDNLLRHKK 356


>Z49074-2|CAE48829.1|  807|Caenorhabditis elegans Hypothetical
           protein ZK970.1b protein.
          Length = 807

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -2

Query: 195 TVPMLMWCRSLQLLYPFVNWLLFLSN--GKLLSTSKLLYISTG 73
           TV ML   R LQ + P +NW  FLS   G+ LS S+ + + TG
Sbjct: 370 TVVML---RELQEIAPAINWHYFLSRLVGENLSHSEPIALKTG 409


>Z49074-1|CAA88893.3|  771|Caenorhabditis elegans Hypothetical
           protein ZK970.1a protein.
          Length = 771

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -2

Query: 195 TVPMLMWCRSLQLLYPFVNWLLFLSN--GKLLSTSKLLYISTG 73
           TV ML   R LQ + P +NW  FLS   G+ LS S+ + + TG
Sbjct: 334 TVVML---RELQEIAPAINWHYFLSRLVGENLSHSEPIALKTG 373


>Z49073-9|CAE48845.1|  807|Caenorhabditis elegans Hypothetical
           protein ZK970.1b protein.
          Length = 807

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -2

Query: 195 TVPMLMWCRSLQLLYPFVNWLLFLSN--GKLLSTSKLLYISTG 73
           TV ML   R LQ + P +NW  FLS   G+ LS S+ + + TG
Sbjct: 370 TVVML---RELQEIAPAINWHYFLSRLVGENLSHSEPIALKTG 409


>Z49073-8|CAA88892.3|  771|Caenorhabditis elegans Hypothetical
           protein ZK970.1a protein.
          Length = 771

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -2

Query: 195 TVPMLMWCRSLQLLYPFVNWLLFLSN--GKLLSTSKLLYISTG 73
           TV ML   R LQ + P +NW  FLS   G+ LS S+ + + TG
Sbjct: 334 TVVML---RELQEIAPAINWHYFLSRLVGENLSHSEPIALKTG 373


>AL031627-22|CAI79188.1|  213|Caenorhabditis elegans Hypothetical
           protein Y102A5C.36 protein.
          Length = 213

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
 Frame = -2

Query: 156 LYPFVNW-----LLFLSNGKLLSTSKLLYISTGLFFHTPTC 49
           ++PFV++     L+F +  K LS  KL+Y    L+F +P C
Sbjct: 22  VFPFVSFIILMFLVFFTGKKCLSAFKLIYFYNFLYF-SPNC 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,415,663
Number of Sequences: 27780
Number of extensions: 151254
Number of successful extensions: 384
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)