Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_F20
(565 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0812 + 23383704-23384143,23384902-23385247 262 2e-70
02_05_1114 + 34218218-34218463,34219143-34219179,34219450-342196... 30 1.5
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703... 29 1.9
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 29 1.9
11_01_0657 + 5322295-5323367,5323436-5323555,5323743-5323791,532... 29 1.9
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 28 4.5
08_01_0533 + 4625376-4625709,4625799-4625966,4627428-4627689,462... 28 4.5
03_02_0251 - 6821612-6823405,6823738-6823878 28 4.5
03_04_0174 - 18044516-18046327 28 5.9
03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922 28 5.9
11_06_0377 - 22900042-22900452,22900527-22902236 27 7.8
02_03_0110 - 15350939-15352162,15352591-15353310,15353776-15353949 27 7.8
>12_02_0812 + 23383704-23384143,23384902-23385247
Length = 261
Score = 262 bits (641), Expect = 2e-70
Identities = 118/180 (65%), Positives = 148/180 (82%), Gaps = 1/180 (0%)
Frame = +2
Query: 29 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGQGT-LTV 205
MGRVIRAQRKGAGSVF SHT RKG + RSLD+ ER+GY+KGVV DIIHDPG+G L
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60
Query: 206 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 385
V FR P+++K +KELF+A EG+YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E +
Sbjct: 61 VTFRHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHV 120
Query: 386 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 565
GDRG ARASG++A VI HNPD +R+KLPSGAKK++PSS R M+G VAGGGR +KP+L
Sbjct: 121 GDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPML 180
>02_05_1114 +
34218218-34218463,34219143-34219179,34219450-34219633,
34219725-34219873,34220271-34220504,34220592-34220781,
34220863-34220988,34221386-34221485,34221598-34221957
Length = 541
Score = 29.9 bits (64), Expect = 1.5
Identities = 24/69 (34%), Positives = 30/69 (43%)
Frame = -1
Query: 559 GLVNTTTTRDNTNHASVA*W*HFFGTRWKLYSRTFGVRIVTYNCGKIARGASQSSSITHL 380
GL+NTTT N ++ S W GT K+ S TF T A A S IT L
Sbjct: 374 GLLNTTTFEPNPDYYSALLWNRLMGT--KVLSATFN---GTNKIRAYAHCARDSRGITLL 428
Query: 379 FFQITHNCT 353
++ N T
Sbjct: 429 LINLSGNNT 437
>12_01_1024 - 10467644-10469274,10469424-10469482,10469820-10470357,
10470975-10471666,10471912-10472062,10473797-10473864,
10473964-10474042,10474763-10474765,10476427-10477255
Length = 1349
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 448 GRQTYASKASIWCQKSVTIKQQRHGWYCRGWWSY*QAH 561
G++ S CQKS + K++ GW+C W Q H
Sbjct: 895 GQENPDSLTDYGCQKSGSTKKKVAGWWCGKVWMSNQVH 932
>11_01_0658 +
5342508-5343602,5343697-5343764,5343994-5344042,
5344217-5344333,5344438-5344506,5344631-5344725,
5345580-5345658,5346499-5346563,5347368-5347461,
5347675-5347744,5348363-5349357
Length = 931
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 476 EALLAYVWRPDCDL*LWQNCQRREPVVLDHPSFLPNYTQL 357
E L V+ PD + W+ C RR ++ S +P +QL
Sbjct: 431 EGHLRIVFNPDLKIASWEFCARRHEELIPRRSIIPQVSQL 470
>11_01_0657 +
5322295-5323367,5323436-5323555,5323743-5323791,
5323968-5324084,5324200-5324268,5324394-5324488,
5325183-5325521,5327043-5327084,5327814-5327907,
5328121-5328190,5328719-5329677
Length = 1008
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 476 EALLAYVWRPDCDL*LWQNCQRREPVVLDHPSFLPNYTQL 357
E L V+ PD + W+ C RR ++ S +P +QL
Sbjct: 441 EGHLRIVFNPDLKIASWEFCARRHEELIPRRSIIPQVSQL 480
>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 122 LDYAERHGYIKGVVKDIIHDPGQGTLTVVH 211
LD+ R G IKGV + +++ LTV+H
Sbjct: 3094 LDWPTRFGIIKGVARGLLYLHQDSRLTVIH 3123
>08_01_0533 + 4625376-4625709,4625799-4625966,4627428-4627689,
4627787-4627934,4628453-4628496,4628812-4628859,
4629245-4630509,4630741-4630839,4630916-4631097,
4631186-4631246,4631488-4631725,4631818-4631971,
4632042-4632335
Length = 1098
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +2
Query: 32 GRVIRAQRKGAGSVFVSHTKK--RKGAPKLRSLDYAERHGYIKGVVKDIIHDPGQGTLTV 205
G V + G + V K + A + +LD+ R IKGV + I++ LT+
Sbjct: 846 GTVYKGTMDGDKEIAVKRLSKGSAQDASRNSALDWTTRFKIIKGVARGILYLHQDSRLTI 905
Query: 206 VH 211
+H
Sbjct: 906 IH 907
>03_02_0251 - 6821612-6823405,6823738-6823878
Length = 644
Score = 28.3 bits (60), Expect = 4.5
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Frame = +3
Query: 183 LVRAPLLLSISVIRTSSRRAKNCSLLQKVFILVNL-FTVARKQL*KLAM*CLWVLCLKVQ 359
L P V+R S+R A + F LV + VA +L LW+ L Q
Sbjct: 407 LGNCPQTAGCGVLRGSARPASGARINLASFYLVGMPVGVALAFGARLGFAGLWLGLLAAQ 466
Query: 360 L-CVIWKKRWVIEDDWLAPLAILPQL 434
C +W R V DW +A +L
Sbjct: 467 AACAVWMARAVAATDWDVEVARAKEL 492
>03_04_0174 - 18044516-18046327
Length = 603
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 418 ARGASQSSSITHLFFQITHNCTFRHSTHRHYIAN 317
+RG++ S S H THN T+ H +H HY N
Sbjct: 35 SRGSTSSPSSHH-----THNHTYYHHSHSHYNNN 63
>03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922
Length = 147
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 443 NPDAKRTRVKLPS--GAKKVLPSSNRGMVGIVAGGGRIDKPI 562
+P + RTR PS GA K ++ +G+ GG R+ PI
Sbjct: 45 SPTSTRTRTSTPSAPGAAKAASPNHVRAIGVREGGARLVGPI 86
>11_06_0377 - 22900042-22900452,22900527-22902236
Length = 706
Score = 27.5 bits (58), Expect = 7.8
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +2
Query: 305 ATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRL-ARASGNFATVIGHNPDAKRTRVK 472
A L+ G P+G + E VC L + D R+ A +G + G PD + RV+
Sbjct: 373 AALDDGEERPLGGLVEELFVCRLGD--DDEVRVGANHNGEGRRLRGPRPDGEEARVR 427
>02_03_0110 - 15350939-15352162,15352591-15353310,15353776-15353949
Length = 705
Score = 27.5 bits (58), Expect = 7.8
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Frame = +2
Query: 326 VMPVGAMPEG---TIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 496
V+PV +G + E RGR ARAS G N +KR R+ +P+ + +
Sbjct: 469 VVPVTHFQQGWNAPVAIGGEHLYNQRGREARASDAIVINGGDNNLSKRKRLTVPARSNSL 528
Query: 497 LPSSNRGMVGIVAGGGRIDKPI 562
+N I +G R+ PI
Sbjct: 529 --KNNMASNSIKSGSQRMWVPI 548
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,741,049
Number of Sequences: 37544
Number of extensions: 409002
Number of successful extensions: 1152
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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