Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_F20
(565 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical pr... 278 2e-75
AF045646-7|AAK29833.2| 321|Caenorhabditis elegans Hypothetical ... 36 0.020
Z31590-5|CAA83462.1| 245|Caenorhabditis elegans Hypothetical pr... 29 1.7
U28944-18|AAA68375.2| 246|Caenorhabditis elegans Helix loop hel... 29 2.3
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z68221-5|CAJ30235.1| 416|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z68221-4|CAJ30234.1| 488|Caenorhabditis elegans Hypothetical pr... 28 5.3
X57834-1|CAA40967.1| 416|Caenorhabditis elegans elt-1 protein. 28 5.3
U41015-5|AAA82310.1| 166|Caenorhabditis elegans Hypothetical pr... 27 7.0
>Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical
protein B0250.1 protein.
Length = 260
Score = 278 bits (681), Expect = 2e-75
Identities = 122/180 (67%), Positives = 150/180 (83%), Gaps = 1/180 (0%)
Frame = +2
Query: 29 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGQGT-LTV 205
MGR IR QRKGAG +F SH K RKGA KLR LDYAERHGYIKG+VKDIIHDPG+G L +
Sbjct: 1 MGRRIRIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAI 60
Query: 206 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 385
+ FRDPYK+KT K +A EG++TGQF++CG KA +++GN++PVG +PEGT +CN+E K
Sbjct: 61 IAFRDPYKYKTVKTTVVAAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKS 120
Query: 386 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 565
GDRG +ARASGN+ATVI HNPD K+TR++LPSGAKKV+ S NR M+G+VAGGGR DKP+L
Sbjct: 121 GDRGVIARASGNYATVIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLVAGGGRTDKPLL 180
>AF045646-7|AAK29833.2| 321|Caenorhabditis elegans Hypothetical
protein F56B3.8 protein.
Length = 321
Score = 35.9 bits (79), Expect = 0.020
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 320 GNVMPVGAMPEGTIVCNLEE-KMGDRGRLARASGNFATVIGHNPDAKRTRVKLP 478
GN P+G++ GT++ ++E D +A+G AT++ H D T VKLP
Sbjct: 160 GNAYPIGSLAAGTVINSIERYPTMDSETFVKAAGTSATIVRHQGDF--TVVKLP 211
>Z31590-5|CAA83462.1| 245|Caenorhabditis elegans Hypothetical
protein R01H10.4 protein.
Length = 245
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 187 SGHPYCCPFP*SVQVQDAQRTVH-CSRRSLY 276
SG YCC P + DAQ T+H CSRR +
Sbjct: 190 SGKCYCCCAPYTPNPCDAQCTLHPCSRRQTF 220
>U28944-18|AAA68375.2| 246|Caenorhabditis elegans Helix loop helix
protein 14 protein.
Length = 246
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 438 PITVAKLPEARASRPRSPIFSSKLHTIVPSGIAPTGI 328
PI+ +P R SRP P+ S +H++ P + T +
Sbjct: 47 PISTLLVPPIRLSRPAFPLTISLIHSVHPHSLLATTV 83
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 29 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAER 139
+GR R+ +KG F +HT K L+ LD A++
Sbjct: 464 IGRTGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQ 500
>Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical
protein T24B8.1 protein.
Length = 134
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +2
Query: 434 IGHNPDAKRTRVKLPSGAKKVL 499
IGH D +RTR LP+G KKVL
Sbjct: 57 IGHGSD-RRTRFVLPNGYKKVL 77
>Z68221-5|CAJ30235.1| 416|Caenorhabditis elegans Hypothetical
protein W09C2.1b protein.
Length = 416
Score = 27.9 bits (59), Expect = 5.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 292 LWQESNSRSWQCNACGCY 345
LW+ S ++ CNACG Y
Sbjct: 227 LWRRDGSGNYLCNACGLY 244
>Z68221-4|CAJ30234.1| 488|Caenorhabditis elegans Hypothetical
protein W09C2.1a protein.
Length = 488
Score = 27.9 bits (59), Expect = 5.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 292 LWQESNSRSWQCNACGCY 345
LW+ S ++ CNACG Y
Sbjct: 299 LWRRDGSGNYLCNACGLY 316
>X57834-1|CAA40967.1| 416|Caenorhabditis elegans elt-1 protein.
Length = 416
Score = 27.9 bits (59), Expect = 5.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 292 LWQESNSRSWQCNACGCY 345
LW+ S ++ CNACG Y
Sbjct: 227 LWRRDGSGNYLCNACGLY 244
>U41015-5|AAA82310.1| 166|Caenorhabditis elegans Hypothetical
protein F20B6.1 protein.
Length = 166
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -1
Query: 448 RIVTYNCGKIARGASQSSSITHLFFQITHNCTFRHSTHRHY 326
R+ T +C +I G ITH ++ T + S HY
Sbjct: 40 RVYTESCTEIEIGGKSKDKITHRVLKVVVKATGQESKLNHY 80
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,685,018
Number of Sequences: 27780
Number of extensions: 341371
Number of successful extensions: 834
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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