Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F19
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    27   1.3  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    27   1.7  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    27   2.3  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    26   3.0  
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    26   3.0  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    25   6.9  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   9.1  

>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -3

Query: 262 SPSCVTKLYVAGATDIFAILLKKMNLSSLYSTR---LQYVRICSSLSNIL 122
           SP+ +  +  A ATDI   ++   NL S+Y++      Y ++C   S IL
Sbjct: 350 SPTALAAIRAACATDINFDVVNASNLDSMYTSGKIVAMYAQVCLVASRIL 399


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 96  WYLYKHFYKSILLRLEQIRTYCNLVEYKELKFIFFSNIANISVAPAT 236
           WYL+  F KSI  ++         V Y E       ++ NISV+P T
Sbjct: 556 WYLFYRFVKSIKKQV---------VNYTESSLAMLGDLLNISVSPVT 593


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 42  ISAKLFLLLTHWCLFVSRWYLYKHFYKSILLRLEQIRTYC 161
           +SA++FL      L ++R  +Y   +++ L  L+++  YC
Sbjct: 301 VSAQIFLWCLFGVLMIARGLIYLALFRNFLNILKRMAIYC 340


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = +3

Query: 39  KISAKLFLLLTHWCLFVSRWYLYKHFYKSILLRLEQIRTYCNLV--EYKELKFIFFSNIA 212
           K+S    LLL H  L V      K F   + L   +I  +C+LV   Y++    ++S   
Sbjct: 643 KLSPWNMLLLLHGLLSVDISLKQKKFVPGMKLSKREIDGWCSLVFEAYQKWNRCYYSIFL 702

Query: 213 NISVAPATYNLVTQ 254
           N ++ P  +  V +
Sbjct: 703 NNNILPFGHPFVKE 716


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -1

Query: 384 WTNAFCAAFFWSVAPRPPCCFFILDIFSAAFA 289
           W N   A F + V P+P   F   D F   FA
Sbjct: 461 WANGIKAEFLYKVKPKPRQQFDAADKFDVPFA 492


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 111 HFYKSILLRLEQIRTYCNLVEYKELKFIFFSNIANISV 224
           HF  S LL  + +  +  L+      F++FSN  NIS+
Sbjct: 795 HFLTSSLLNEQGLTAFEVLMTVWCDNFVYFSNFKNISI 832


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 141  EQIRTYCNLVEYKELKFIFFSNIANISVAPATYNLVTQDGLG 266
            E++ +  N+ +    K++ F N+ N+  A A+Y  + Q G G
Sbjct: 1321 EEVCSVFNISKSVCSKYVQFGNVFNLLHAGASYIRIHQKGYG 1362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,048,489
Number of Sequences: 5004
Number of extensions: 39116
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)