Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F19
         (525 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1342 + 29461083-29461365,29461991-29462029,29462257-29462285     31   0.75 
02_05_0755 - 31519765-31519896,31520073-31520135,31520236-315203...    30   0.99 
07_01_0104 + 796572-796644,796780-796820,797603-797722                 28   4.0  
11_06_0297 + 22056644-22058212,22058316-22058423,22058513-220586...    27   9.2  

>06_03_1342 + 29461083-29461365,29461991-29462029,29462257-29462285
          Length = 116

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 389 CAVCKAQMPDPKTYKQHFENKHPK 460
           C +CK   PD K+ + H E +HPK
Sbjct: 49  CPLCKTTAPDIKSMQIHHEARHPK 72


>02_05_0755 -
           31519765-31519896,31520073-31520135,31520236-31520352,
           31520553-31520642,31520897-31520984,31521462-31521531,
           31521945-31522023,31523231-31523275,31523927-31524013,
           31524101-31524184,31524304-31524483,31524562-31524702,
           31524873-31524981,31525411-31525466,31525877-31525924,
           31526021-31526159,31526710-31526817,31527138-31527164,
           31527325-31527417,31527837-31527916,31528051-31528140,
           31528286-31528376,31528503-31528591,31528756-31528794,
           31530611-31530733
          Length = 755

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -3

Query: 268 PPSPSCVTKLYVAGATDIFAILLKKMNLSSLYSTRLQYVRICSSLSNILL 119
           PP  +   KLY   A D+F IL +++ + +  ST +   RI  ++  ++L
Sbjct: 425 PPKSTEDGKLYTPAAVDLFRILTEQVQIVTENSTDVMLYRIALAVIQVML 474


>07_01_0104 + 796572-796644,796780-796820,797603-797722
          Length = 77

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +2

Query: 332 GGRGATDQKKAAQKALVHVCAVCKAQM---PDPKTYKQHFENKHPKNDL 469
           G +G+  Q +A +KA+   C +C             K+H E KHPK+DL
Sbjct: 22  GAKGS--QLEANKKAMNIQCKICMQTFICTTSETKCKEHAEAKHPKSDL 68


>11_06_0297 +
           22056644-22058212,22058316-22058423,22058513-22058678,
           22059000-22059056,22059382-22059479,22059556-22059765,
           22060469-22060582,22060819-22060948,22061165-22061298,
           22062279-22062359,22062798-22062872,22063210-22063221
          Length = 917

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 386 VCAVCKAQ-MPDPKTYKQHFENKHPK 460
           +C  C  + +PD  +  QH  NKHP+
Sbjct: 400 ICPYCVGKKIPDTDSLLQHMRNKHPE 425


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,053,835
Number of Sequences: 37544
Number of extensions: 248518
Number of successful extensions: 498
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)