Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_F19
(525 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68213-4|CAA92441.1| 73|Caenorhabditis elegans Hypothetical pr... 77 8e-15
AF202929-1|AAK69379.1| 73|Caenorhabditis elegans Nx protein. 77 8e-15
Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical p... 33 0.13
AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical ... 33 0.13
U22832-3|AAA64508.2| 359|Caenorhabditis elegans Hypothetical pr... 31 0.38
U49941-10|AAB53870.1| 73|Caenorhabditis elegans Hypothetical p... 30 1.2
Z77667-6|CAB01235.2| 870|Caenorhabditis elegans Hypothetical pr... 29 2.0
AF416567-1|AAL27004.1| 870|Caenorhabditis elegans nuclear zinc ... 29 2.0
AF300704-1|AAG24400.1| 622|Caenorhabditis elegans incenp-like p... 29 2.0
AC025716-5|AAK39616.1| 622|Caenorhabditis elegans Incenp homolo... 29 2.0
AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical ... 29 2.7
AF068709-15|AAC19246.2| 317|Caenorhabditis elegans Serpentine r... 28 4.7
Z78198-12|CAJ85750.1| 205|Caenorhabditis elegans Hypothetical p... 27 6.2
Z81589-3|CAB04719.1| 256|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z73974-8|CAA98274.2| 526|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z73905-7|CAA98112.2| 526|Caenorhabditis elegans Hypothetical pr... 27 8.2
U53155-9|AAC48273.1| 328|Caenorhabditis elegans Seven tm recept... 27 8.2
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 27 8.2
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 27 8.2
>Z68213-4|CAA92441.1| 73|Caenorhabditis elegans Hypothetical
protein C01F6.9 protein.
Length = 73
Score = 77.0 bits (181), Expect = 8e-15
Identities = 33/48 (68%), Positives = 36/48 (75%)
Frame = +2
Query: 338 RGATDQKKAAQKALVHVCAVCKAQMPDPKTYKQHFENKHPKNDLPEDL 481
+ DQK AA KAL H C VC A MPDPKTYKQHFENKHPK+ LP +L
Sbjct: 23 KAGIDQKAAAAKALNHKCTVCLAMMPDPKTYKQHFENKHPKSPLPAEL 70
>AF202929-1|AAK69379.1| 73|Caenorhabditis elegans Nx protein.
Length = 73
Score = 77.0 bits (181), Expect = 8e-15
Identities = 33/48 (68%), Positives = 36/48 (75%)
Frame = +2
Query: 338 RGATDQKKAAQKALVHVCAVCKAQMPDPKTYKQHFENKHPKNDLPEDL 481
+ DQK AA KAL H C VC A MPDPKTYKQHFENKHPK+ LP +L
Sbjct: 23 KAGIDQKAAAAKALNHKCTVCLAMMPDPKTYKQHFENKHPKSPLPAEL 70
>Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 33.1 bits (72), Expect = 0.13
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +2
Query: 383 HVCAVCKAQMPDPKTYKQHFENKH 454
H+C +C ++P+ +T ++H +NKH
Sbjct: 39 HMCLLCNRRIPENETLREHMKNKH 62
Score = 32.7 bits (71), Expect = 0.17
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 383 HVCAVCKAQMPDPKTYKQHFENKH 454
HVC +C QMP T ++H E +H
Sbjct: 336 HVCVLCNHQMPKTVTVQEHMEKEH 359
Score = 29.9 bits (64), Expect = 1.2
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +2
Query: 383 HVCAVCKAQMPDPKTYKQHFENKH 454
H C +C Q+P+ +T + H +++H
Sbjct: 206 HTCLLCNRQIPENETVRDHMKSQH 229
>AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 33.1 bits (72), Expect = 0.13
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +2
Query: 383 HVCAVCKAQMPDPKTYKQHFENKH 454
H+C +C ++P+ +T ++H +NKH
Sbjct: 39 HMCLLCNRRIPENETLREHMKNKH 62
Score = 32.7 bits (71), Expect = 0.17
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 383 HVCAVCKAQMPDPKTYKQHFENKH 454
HVC +C QMP T ++H E +H
Sbjct: 336 HVCVLCNHQMPKTVTVQEHMEKEH 359
Score = 29.9 bits (64), Expect = 1.2
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +2
Query: 383 HVCAVCKAQMPDPKTYKQHFENKH 454
H C +C Q+P+ +T + H +++H
Sbjct: 206 HTCLLCNRQIPENETVRDHMKSQH 229
>U22832-3|AAA64508.2| 359|Caenorhabditis elegans Hypothetical
protein C09F5.3 protein.
Length = 359
Score = 31.5 bits (68), Expect = 0.38
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +2
Query: 383 HVCAVCKAQMPDPKTYKQHFENKHPK 460
H+C++C + P P+ HF H K
Sbjct: 183 HICSICDSAFPSPQAQSVHFAEAHKK 208
>U49941-10|AAB53870.1| 73|Caenorhabditis elegans Hypothetical
protein K10B3.1a protein.
Length = 73
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = +2
Query: 260 ARGHQKIXXXXXXXXXXXXXXXXXGGRGATDQKKAAQKALVHVCAVC 400
ARGHQK G +DQK AA +L H C VC
Sbjct: 2 ARGHQKALSQQRNAEKTAKAKKAVG----SDQKNAAMASLHHKCTVC 44
>Z77667-6|CAB01235.2| 870|Caenorhabditis elegans Hypothetical
protein M04B2.1 protein.
Length = 870
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +2
Query: 344 ATDQKKAAQKALVHVCAVCKAQMPDPKTYKQHFENKHPKND 466
A Q K +++ C VC + +T + H + HPK D
Sbjct: 813 ADHQVKLCSAEIMYSCDVCAFKCSSYQTLEAHLTSNHPKGD 853
>AF416567-1|AAL27004.1| 870|Caenorhabditis elegans nuclear zinc
finger protein protein.
Length = 870
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +2
Query: 344 ATDQKKAAQKALVHVCAVCKAQMPDPKTYKQHFENKHPKND 466
A Q K +++ C VC + +T + H + HPK D
Sbjct: 813 ADHQVKLCSAEIMYSCDVCAFKCSSYQTLEAHLTSNHPKGD 853
>AF300704-1|AAG24400.1| 622|Caenorhabditis elegans incenp-like
protein ICP-1 protein.
Length = 622
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 353 QKKAAQKALVHVCAVCKAQMPDPKTYKQHFENKHPKNDLPED 478
+K+A Q+AL +M P+TY+ + +N + NDL D
Sbjct: 493 EKQARQEALRKTPPPAAYEMTPPRTYQNNSKNDYGLNDLNSD 534
>AC025716-5|AAK39616.1| 622|Caenorhabditis elegans Incenp homolog
protein 1 protein.
Length = 622
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 353 QKKAAQKALVHVCAVCKAQMPDPKTYKQHFENKHPKNDLPED 478
+K+A Q+AL +M P+TY+ + +N + NDL D
Sbjct: 493 EKQARQEALRKTPPPAAYEMTPPRTYQNNSKNDYGLNDLNSD 534
>AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical
protein T23E7.2e protein.
Length = 908
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = +2
Query: 206 YSKYISSTSYVQFSDTRWARGHQKIXXXXXXXXXXXXXXXXXGGRGATDQKKAAQKAL 379
Y+ YISS SYV+ TR + +Q+ GR +TD K AL
Sbjct: 837 YTAYISSPSYVETESTRRMKRYQRDTSPAMVRSMYEPVYTSQYGRSSTD-KSTGNSAL 893
>AF068709-15|AAC19246.2| 317|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 62 protein.
Length = 317
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +3
Query: 18 SILFHTSKISAKLFLLLTHWCLFVSRWYLYKHFYKSILLRLEQIRTYCNLVEYK 179
S++F I + LLT W ++ W+ + HF+ + LL + ++ + +Y+
Sbjct: 83 SMVFVLKAIESTFPWLLT-WLKYLPYWFFHMHFWTAALLTIHRLTSILFPYQYE 135
>Z78198-12|CAJ85750.1| 205|Caenorhabditis elegans Hypothetical
protein F55C5.11 protein.
Length = 205
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +2
Query: 380 VHVCAV--CKAQMPDPKTYKQHFENKHPKNDLPEDL 481
+H C V C Q ++ +H N +PK +PE L
Sbjct: 134 MHTCTVTGCGKQFSSRRSRNRHSSNNNPKLHMPESL 169
>Z81589-3|CAB04719.1| 256|Caenorhabditis elegans Hypothetical
protein T08G5.7 protein.
Length = 256
Score = 27.1 bits (57), Expect = 8.2
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +2
Query: 389 CAVCKAQMPDPKTYKQHFENKHPKNDL 469
C VC+ +P K K H KH K +
Sbjct: 79 CPVCELVIPTEKGLKNHMNQKHRKKPI 105
>Z73974-8|CAA98274.2| 526|Caenorhabditis elegans Hypothetical
protein F29F11.2 protein.
Length = 526
Score = 27.1 bits (57), Expect = 8.2
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +3
Query: 54 LFLLLTHWCLFVS-RWYLYKHFYKSILLRLEQI 149
LFL T + +FVS YL++ F+KS+ +R E+I
Sbjct: 494 LFLTAT-FAIFVSISLYLFRVFFKSVFVRKEKI 525
>Z73905-7|CAA98112.2| 526|Caenorhabditis elegans Hypothetical
protein F29F11.2 protein.
Length = 526
Score = 27.1 bits (57), Expect = 8.2
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +3
Query: 54 LFLLLTHWCLFVS-RWYLYKHFYKSILLRLEQI 149
LFL T + +FVS YL++ F+KS+ +R E+I
Sbjct: 494 LFLTAT-FAIFVSISLYLFRVFFKSVFVRKEKI 525
>U53155-9|AAC48273.1| 328|Caenorhabditis elegans Seven tm receptor
protein 138 protein.
Length = 328
Score = 27.1 bits (57), Expect = 8.2
Identities = 9/18 (50%), Positives = 16/18 (88%)
Frame = +2
Query: 53 TLFTLNSLVFVCVQMVSI 106
T+FT+NS++F V+M+S+
Sbjct: 42 TIFTINSIIFTWVEMMSL 59
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 326 VSSS*TFSQQPLPVTEFSGAP 264
+++S TF Q P TEF GAP
Sbjct: 60 ITTSKTFGSQTTPKTEFGGAP 80
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 326 VSSS*TFSQQPLPVTEFSGAP 264
+++S TF Q P TEF GAP
Sbjct: 60 ITTSKTFGSQTTPKTEFGGAP 80
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,495,545
Number of Sequences: 27780
Number of extensions: 227539
Number of successful extensions: 682
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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