Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F19
         (525 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    25   0.63 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.3  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   4.4  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   5.8  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   5.8  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.7  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.7  

>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 24.6 bits (51), Expect = 0.63
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 389 CAVCKAQMPDPKTYKQHFENKHPKND 466
           C  C+       + K+HF++KH ++D
Sbjct: 8   CPYCRRNFSCYYSLKRHFQDKHEQSD 33


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 15/48 (31%), Positives = 17/48 (35%)
 Frame = -2

Query: 431 CKFWDPAFEPCKLHTHGLMLFVQPSSGQ*HRDHPVVSSS*TFSQQPLP 288
           C    P   P  LHT    L V   +G      PV+ S   FS    P
Sbjct: 434 CLIHGPPLPPLPLHTECEDLSVSGEAGIEEVKSPVLRSPPAFSHSRCP 481


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 15/48 (31%), Positives = 17/48 (35%)
 Frame = -2

Query: 431 CKFWDPAFEPCKLHTHGLMLFVQPSSGQ*HRDHPVVSSS*TFSQQPLP 288
           C    P   P  LHT    L V   +G      PV+ S   FS    P
Sbjct: 434 CLIHGPPLPPLPLHTECEDLSVSGEAGIEEVKSPVLRSPPAFSHSRCP 481


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/54 (22%), Positives = 20/54 (37%)
 Frame = +3

Query: 87  VSRWYLYKHFYKSILLRLEQIRTYCNLVEYKELKFIFFSNIANISVAPATYNLV 248
           +  W  +      ILLR   +  +   V    +  I   NI +I      Y+L+
Sbjct: 48  IPTWLSFIRIVLVILLRAGYVLIHIGSVPVNNINLILLQNIIDICWITMVYSLL 101


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 105 YKHFYKSILLRLEQI 149
           YK  YK+ ++ +EQI
Sbjct: 113 YKKLYKNYIINIEQI 127


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 105 YKHFYKSILLRLEQI 149
           YK  YK+ ++ +EQI
Sbjct: 113 YKKLYKNYIINIEQI 127


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 275 SGAPEPILCH 246
           SG PEP  CH
Sbjct: 473 SGLPEPCRCH 482


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 167 EIAICANLLESK*YTFIKMFV*IPSGHKQTPM 72
           +IA+C N+L S+   F+ +   IPS     P+
Sbjct: 266 KIALCINILLSQTMFFLLISEIIPSTSLALPL 297


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 275 SGAPEPILCH 246
           SG PEP  CH
Sbjct: 473 SGLPEPCRCH 482


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,573
Number of Sequences: 438
Number of extensions: 2564
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)