Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_F18
(206 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos... 26 0.78
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 1.4
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar... 25 1.8
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe... 23 4.2
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch... 23 4.2
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc... 23 5.5
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom... 23 7.3
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 23 7.3
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp... 23 7.3
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe... 23 7.3
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 22 9.6
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 22 9.6
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy... 22 9.6
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 22 9.6
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy... 22 9.6
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha... 22 9.6
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce... 22 9.6
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 22 9.6
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom... 22 9.6
>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 584
Score = 25.8 bits (54), Expect = 0.78
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 53 FNVFNXLNSPTREKPLRALWERRETLRTWEVPLLR*NPSNWLDEY 187
F F+ + K L+A ER+ W+VP L +P + EY
Sbjct: 349 FTAFSGSHQDAISKGLKAYDERKAVDPVWKVPYLPLDPHDVNSEY 393
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 1.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 35 PEKVPPFNVFNXLNSPTREKP 97
P PP V N L+SPT E P
Sbjct: 967 PSIPPPLPVSNILSSPTSEPP 987
>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 559
Score = 24.6 bits (51), Expect = 1.8
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +3
Query: 6 VFVLSLKFSSRRRFPPLTF---STFSILQRGRNLCG 104
V K+ S+ RFP LT+ ++FSI + + L G
Sbjct: 177 VIYYGCKYRSKNRFPTLTYLHKNSFSITRASQPLVG 212
>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 23.4 bits (48), Expect = 4.2
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +2
Query: 89 EKPLRALWERRE 124
E LR LWERRE
Sbjct: 374 ESQLRVLWERRE 385
>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 23.4 bits (48), Expect = 4.2
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +2
Query: 29 FFPEKVPPFNVF-NXLNSPTREK 94
FFP VPPF F N LN+ +EK
Sbjct: 255 FFPG-VPPFFTFINLLNNVAKEK 276
>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 23.0 bits (47), Expect = 5.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 205 HYETFWVFVQPVGRIL 158
++ TFW +V PVG L
Sbjct: 134 NFFTFWCYVTPVGAAL 149
>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 594
Score = 22.6 bits (46), Expect = 7.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 65 NXLNSPTREKPLRALWERRETLRTWE 142
N N+ REK A+W+ E L WE
Sbjct: 394 NTSNARNREK---AIWQIHEKLLCWE 416
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 22.6 bits (46), Expect = 7.3
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Frame = -1
Query: 146 GLP---RYAVFPAVPIAPAKVS 90
GLP Y FP+VPI PA V+
Sbjct: 254 GLPLSVMYNHFPSVPIPPATVN 275
>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 22.6 bits (46), Expect = 7.3
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 72 SILQRGRNLCGRYGNGGKHCVPGKSHYFVKIL 167
S+L GR +GGK +SH F K++
Sbjct: 404 SVLSDGRLNVDYMSSGGKELSKQQSHVFQKLI 435
>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 511
Score = 22.6 bits (46), Expect = 7.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 191 LGIRPTSWKDFNEVMGLPRYAVFPAVPI 108
LG R + + +E GLP Y VFPA+ +
Sbjct: 364 LGQRRSEDSEHSE-NGLPSYNVFPALTV 390
>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 526
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +3
Query: 129 CVPGKSHYFVKILPTGWTNTQ 191
C + HYF LP G+ TQ
Sbjct: 77 CKFDRKHYFYPDLPAGYQITQ 97
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 22.2 bits (45), Expect = 9.6
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 93 NLCGRYGNGGKHCVPGKSHYFVKILP 170
N CG Y KH P KS I P
Sbjct: 34 NACGLYQKHRKHARPVKSEDLKDISP 59
>SPAC9.09 |met26||homocysteine
methyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 764
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 96 GFSRVGELRXLKTLKGGTFSGK 31
GF R+G+ R LK +SGK
Sbjct: 8 GFPRIGKNRELKKATEAYWSGK 29
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 22.2 bits (45), Expect = 9.6
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +1
Query: 79 SNAGETFAGAMGTAGNTAYLGSPITSLKSFQLVGRI 186
S F G MG+ AYL SP S + G+I
Sbjct: 456 SATNRNFKGRMGSREALAYLASPAVVAAS-AIAGKI 490
>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 505
Score = 22.2 bits (45), Expect = 9.6
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +1
Query: 70 SQFSNAGETFAGAMGTAGNTAYLGSPITSL 159
S F NA +AG A SPIT+L
Sbjct: 226 SSFVNAAFAYAGTESIALTAGEAKSPITTL 255
>SPBC887.10 |mcs4||two-component response regulator
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 522
Score = 22.2 bits (45), Expect = 9.6
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -3
Query: 204 TMKHFGYSSNQLEG 163
T H G+ SNQ++G
Sbjct: 317 TQAHLGFPSNQIDG 330
>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 462
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +2
Query: 128 LRTWEVPLLR*NPSNWL 178
L TW+ P NP NW+
Sbjct: 24 LVTWQSPTDPKNPKNWI 40
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +2
Query: 113 ERRETLRTWEVPLLR*NPSNWLDEYP 190
+ ++ +T+ P NPSN + YP
Sbjct: 114 DSQDNTQTYSTPYTTMNPSNEMHPYP 139
>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3
Query: 24 KFSSRRRFPPLTFSTFSIL 80
KF RR FP TF+ S +
Sbjct: 284 KFGVRRLFPTFTFAVVSAI 302
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 930,046
Number of Sequences: 5004
Number of extensions: 16012
Number of successful extensions: 48
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 48
effective length of database: 2,122,286
effective search space used: 42445720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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