Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_F18
(206 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1079 + 8832779-8833960 29 0.39
08_02_1011 - 23544917-23544964,23545334-23545822,23546661-235470... 27 2.1
07_03_0866 - 22134215-22135351 27 2.7
07_01_0042 - 334417-334431,334563-334688,334852-335136,335220-33... 26 3.6
01_07_0297 - 42583439-42583697,42583763-42583953,42583995-425842... 26 3.6
02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358... 25 6.3
01_07_0205 - 41978437-41980599,41980805-41981215 25 6.3
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 25 6.3
10_08_0512 + 18455454-18456121,18456214-18456318,18457493-184576... 25 8.4
10_03_0019 - 7123502-7123673,7124145-7124226,7124228-7124394,712... 25 8.4
>06_01_1079 + 8832779-8833960
Length = 393
Score = 29.5 bits (63), Expect = 0.39
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +2
Query: 71 LNSPTREKPLRALWERRETLRTWEVPLLR*NPSNWLDEYPKCF 199
L P+R P+R L R +TL L +NWL +YP CF
Sbjct: 33 LRFPSRTAPVRLLQSRFKTLD------LLGRAANWLRKYPSCF 69
>08_02_1011 -
23544917-23544964,23545334-23545822,23546661-23547054,
23548707-23549104
Length = 442
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 66 TFSILQRGRNLCGRYGNGGKHCVPGKSH 149
T I+ R +C G GG HC G +H
Sbjct: 82 TEEIMAPSRGVCAYDGGGGGHCDGGAAH 109
>07_03_0866 - 22134215-22135351
Length = 378
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -1
Query: 152 VMGLPRYAVFPAVPIAPAKVSPAL 81
++ +PR A F A+ A AKV+PAL
Sbjct: 77 IVSVPRAATFDALVAALAKVAPAL 100
>07_01_0042 -
334417-334431,334563-334688,334852-335136,335220-335368,
336239-336536,337030-337131,337245-337613,337973-338115,
338334-338518,339246-339475,339734-339821,340158-340253,
340397-340512,340604-340852,340950-341175,341411-341622
Length = 962
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +3
Query: 111 GNGGKHCVPGKSHYFVKILPTGW 179
GN G +P K YF LP GW
Sbjct: 465 GNHGGWFLPQKKSYFALRLPQGW 487
>01_07_0297 -
42583439-42583697,42583763-42583953,42583995-42584201,
42584291-42584362,42584472-42584507
Length = 254
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 45 FPPLTFSTFSILQRGRNLCGRYGNG 119
FP + I+QR +LCG GNG
Sbjct: 177 FPEHKYEIVRIIQREGHLCGMTGNG 201
>02_04_0371 + 22434710-22435102,22435428-22435624,22435707-22435824,
22436458-22436574,22436702-22436803,22437431-22437487,
22437976-22438044,22438423-22438533,22438597-22438791,
22439023-22439121,22439656-22440222,22440344-22440568,
22441036-22441338,22441640-22441707,22441947-22442105,
22442230-22442475,22442549-22442680,22443243-22443351,
22444131-22444283,22444359-22444601,22444695-22444862,
22445013-22445156,22445238-22445699,22446495-22446791,
22446867-22447024,22447139-22447246,22447474-22447732
Length = 1752
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 89 EKPLRALWERRETLRTWEVPLLR*NPSNWL 178
E+ LR L+ R + VPLLR + SNW+
Sbjct: 1104 EEQLRFLFHRMKDAELDVVPLLRGSFSNWI 1133
>01_07_0205 - 41978437-41980599,41980805-41981215
Length = 857
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -2
Query: 76 IEXVENVKGGNLLREENLRDKT 11
++ +E+VKG NL +ENLR T
Sbjct: 658 VKRIEDVKGVNLHTKENLRHLT 679
>01_03_0256 +
14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 167 KDFNEVMGLPRYAVFPAVPIAPAKV 93
K F +GL + P++PI+P KV
Sbjct: 651 KQFEMFLGLRLFKHLPSIPISPLKV 675
>10_08_0512 +
18455454-18456121,18456214-18456318,18457493-18457615,
18457732-18457902,18458076-18458205,18458458-18458670,
18458757-18458866,18459144-18459186
Length = 520
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 73 QFSNAGETFAGAMGTAGNTAYLGSPITSLKSFQLVGRIPKMFH 201
Q AG +++G G++GN S ++ + LVG +P+ H
Sbjct: 129 QCDRAGSSYSGDEGSSGNARRHFSQYATVSASPLVG-LPEFSH 170
>10_03_0019 -
7123502-7123673,7124145-7124226,7124228-7124394,
7124569-7125182
Length = 344
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +2
Query: 77 SPTREKPLRALWERR--ETLRTWEVPLL 154
+PTR +PL+A + RR TLR PLL
Sbjct: 83 TPTRARPLQAYYLRRLAHTLRLAPSPLL 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,312,264
Number of Sequences: 37544
Number of extensions: 114870
Number of successful extensions: 312
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 14,793,348
effective HSP length: 48
effective length of database: 12,991,236
effective search space used: 259824720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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