Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F17
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    30   0.17 
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    26   2.8  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    26   3.7  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   4.8  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    25   8.4  

>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +1

Query: 100 VVHKINDLFVTLGTYYHLDSRRKRCV 177
           ++ K+++  V LG Y +LDS R++C+
Sbjct: 335 LLKKLSETIVALGQYNYLDSNRRKCI 360


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 313 KMNNKLKLCKTRKILTKKISTYLNMDTSSKRQEKN 417
           K +N    C+ RK+ + K+S   NM+ S  ++E++
Sbjct: 83  KTHNVSFSCEIRKVKSSKLSPISNMEDSEDKKEED 117


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 429 YRPPIFFLSLATCIHIKV 376
           + PPIFF  L TC+  K+
Sbjct: 226 FAPPIFFYLLGTCVKPKI 243


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 124 FVTLGTYYHLDSRRK 168
           F TLGT+YHL   RK
Sbjct: 203 FDTLGTHYHLSKSRK 217


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -2

Query: 180 NNTSFTARIQMIISPKCYKQIIDFMYHCFSC 88
           NN S T R   +    C K I +  +HC  C
Sbjct: 49  NNNSPTLRSSSVACNTCLKIIRNDSFHCTKC 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,793,752
Number of Sequences: 5004
Number of extensions: 30507
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)