Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F17
         (502 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0198 - 41918276-41918408,41918486-41918841,41919091-419192...    28   3.7  
02_01_0211 - 1406098-1406227,1406581-1406714,1407241-1407380,140...    28   4.8  
06_02_0034 - 10800691-10802215,10802294-10802828,10802902-10803397     27   6.4  
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247     27   6.4  
06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322     27   6.4  
06_02_0024 - 10714741-10716241,10716774-10717840                       27   8.5  

>01_07_0198 -
           41918276-41918408,41918486-41918841,41919091-41919237,
           41919666-41921789,41922150-41922344,41922488-41922568,
           41923325-41923414,41923507-41923593,41923914-41923961
          Length = 1086

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 250 HCAC-FC*RCAEWKSMTAAVVVKMNNKLKLCKTRKILTKKISTYLNMDTSSKRQEKNGRP 426
           +CA  FC  C+  KS+ A++    N   ++C +      K++  L  DT+S    K G  
Sbjct: 678 NCALVFCHSCSSKKSLKASLAPNPNKPYRVCDS---CYSKLTKGLETDTNS--STKRGTV 732

Query: 427 IQG 435
           +QG
Sbjct: 733 VQG 735


>02_01_0211 -
           1406098-1406227,1406581-1406714,1407241-1407380,
           1407639-1407829,1408853-1409346
          Length = 362

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 318 HLHHNSSRHRLPLRTSSAETR 256
           HLHH+   HRLPL  S    R
Sbjct: 15  HLHHHHRHHRLPLLPSQPRPR 35


>06_02_0034 - 10800691-10802215,10802294-10802828,10802902-10803397
          Length = 851

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = -2

Query: 498 LYCQNL**VTCIIYLVIIFSSSLYRPPIFFLSLATC 391
           LYC ++  ++ +  ++++ + +LYRP I   +L+ C
Sbjct: 585 LYCNSVSFMSSLSLIILLVNPNLYRPAIQSYALSVC 620


>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
          Length = 974

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -2

Query: 495 YCQNL**VTCIIYLVIIFSSSLYRPPIFFLSLATC 391
           YC ++  ++ I  ++++ + +LYRP I   +L+ C
Sbjct: 637 YCNSMSFMSSIALIILLVNPNLYRPAIRSYALSVC 671


>06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322
          Length = 665

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -2

Query: 495 YCQNL**VTCIIYLVIIFSSSLYRPPIFFLSLATCI 388
           YC +L  ++ I  +++  + +LYRP I   +L+ C+
Sbjct: 589 YCNSLSFMSSIALIILHVNPNLYRPAIRSYALSVCV 624


>06_02_0024 - 10714741-10716241,10716774-10717840
          Length = 855

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -2

Query: 495 YCQNL**VTCIIYLVIIFSSSLYRPPIFFLSLATCI 388
           YC     ++ I  ++++ + +LYRP I   +L+ C+
Sbjct: 571 YCNTTSFMSSIALIILLVNPNLYRPAIHSYALSVCM 606


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,582,807
Number of Sequences: 37544
Number of extensions: 167813
Number of successful extensions: 389
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)