Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F17
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81047-5|CAB02832.3|  390|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AC006656-3|AAF39882.1|  549|Caenorhabditis elegans Hypothetical ...    29   2.5  
AC006693-3|AAF60377.1|  455|Caenorhabditis elegans Skn related p...    27   5.8  

>Z81047-5|CAB02832.3|  390|Caenorhabditis elegans Hypothetical
           protein C41G6.7 protein.
          Length = 390

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 474 VTCIIYLVIIFSSSLYRPPIFFLSLATCI 388
           V C+++L+I+F  SL +  +F   +A CI
Sbjct: 60  VLCLLHLMILFRKSLRKNGVFVFMIAICI 88


>AC006656-3|AAF39882.1|  549|Caenorhabditis elegans Hypothetical
           protein H12I13.3 protein.
          Length = 549

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
 Frame = +1

Query: 289 SMTAAVVVKMNNKLKLCKTRKILTKKIST----YLNMDTSSKRQEKN 417
           ++  A++  +N+ LKL K  +ILT K S     Y+ ++T+ ++Q KN
Sbjct: 287 NLIKALIQALNHGLKLKKIHRILTFKESAWMKKYIMLNTNLRKQAKN 333


>AC006693-3|AAF60377.1|  455|Caenorhabditis elegans Skn related
           protein 1 protein.
          Length = 455

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -1

Query: 226 KHLKIFPQDPQSQLHQQHIFYGENPNDNKSQVLQTNH*FYVPLF*LQYLLMIFF 65
           K ++IF  D  S  H ++  +  +  +   ++LQ NH FY+  F L+    +FF
Sbjct: 285 KFVRIFYNDIWSLPHWRYSTFKRDQTEIFHKILQLNHLFYLVSFGLKKPENLFF 338


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,849,143
Number of Sequences: 27780
Number of extensions: 169624
Number of successful extensions: 483
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)