Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_F16
(580 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 36 0.003
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 32 0.053
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.12
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 31 0.16
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 29 0.49
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p... 27 2.0
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ... 27 2.6
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 27 2.6
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 26 4.6
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 4.6
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 26 4.6
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch... 25 6.1
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 25 6.1
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 25 8.0
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 25 8.0
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 36.3 bits (80), Expect = 0.003
Identities = 24/111 (21%), Positives = 43/111 (38%)
Frame = +1
Query: 13 ESKDVTRESKDVTLESKDVTPESKDVTPESKDVTPESKDVTPENKQTPSRRRAKTPTSAE 192
+ K +E ES+ + ES+ + ES+ + ES+ + E+ + S T +
Sbjct: 74 QKKSKKKEESSSESESESSSSESESSSSESESSSSESESSSSESSSSESEEEVIVKTEEK 133
Query: 193 VRQIITRRMSREMAERGEDSIIVEENLTPXXXXXXXXXXNADDNESVASES 345
S E E E + +EE + ++ES +SES
Sbjct: 134 KESSSESSSSSESEEEEEAVVKIEEKKESSSDSSSESSSSESESESSSSES 184
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 32.3 bits (70), Expect = 0.053
Identities = 29/141 (20%), Positives = 50/141 (35%)
Frame = +1
Query: 88 VTPESKDVTPESKDVTPENKQTPSRRRAKTPTSAEVRQIITRRMSREMAERGEDSIIVEE 267
V ++K + + V NK S T TS++V SR + + ++
Sbjct: 340 VGSQTKSHSFATPSVFDNNKPVSSDNHNNTTTSSQVHPD-----SRNPDPKAAPKAVSQK 394
Query: 268 NLTPXXXXXXXXXXNADDNESVASESSVTSNMSRVSXXXXXXXXXXKSSQCRKGKKSIVA 447
N NES + +SS S SS+ +KG K+
Sbjct: 395 TNVDGHRNHEAKHGNTVQNESKSQKSSNKEGRSSRGGFFSRLSFSRSSSRMKKGSKAKHE 454
Query: 448 TKPELSVIPEVIVEDTTNKDA 510
P++ IP + D++ K +
Sbjct: 455 DAPDVPAIPHAYIADSSTKSS 475
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.1 bits (67), Expect = 0.12
Identities = 28/113 (24%), Positives = 44/113 (38%)
Frame = +1
Query: 112 TPESKDVTPENKQTPSRRRAKTPTSAEVRQIITRRMSREMAERGEDSIIVEENLTPXXXX 291
TP S +P + +PS + ++A R ++R S+ AER E S T
Sbjct: 1251 TPRSSVPSPHSNASPSPTSSSMASAAPARTSVSR--SKSKAERHETS-------TSSRKS 1301
Query: 292 XXXXXXNADDNESVASESSVTSNMSRVSXXXXXXXXXXKSSQCRKGKKSIVAT 450
+ NE A SS ++++ +SS K SIV+T
Sbjct: 1302 SKSGEHHHHHNEGHADSSSTRTSLAHQDSRKSLHRHLSRSSSRASKKPSIVST 1354
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 30.7 bits (66), Expect = 0.16
Identities = 37/173 (21%), Positives = 62/173 (35%), Gaps = 5/173 (2%)
Frame = +1
Query: 34 ESKDVTLESKDVTPES--KDVTPESKDVTPESKDVTPENKQTPSRRRAKTPTSAEVRQII 207
E D + S D ES +D S ES+ + + + S +++ +S+E
Sbjct: 124 EDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSS 183
Query: 208 TRRMSREMAERGEDSIIVEENLTPXXXXXXXXXXNADDNESVASESSVTSNMSRVSXXXX 387
+ E EDS + ++ + S SESS N S S
Sbjct: 184 SSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDS 243
Query: 388 XXXXXXK---SSQCRKGKKSIVATKPELSVIPEVIVEDTTNKDATDIVAEYSS 537
+ SS +S ++K S ED ++ D++D +E SS
Sbjct: 244 ESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSS 296
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 29.1 bits (62), Expect = 0.49
Identities = 18/77 (23%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +1
Query: 10 LESKDVTRESKDVTLESKDVTPESKDV-TPESKDVTPESKDVTPENKQTPSRRRAKTPTS 186
LESK+ + S+++ S+ ++P ++ +P+ + V PE K+ + + + + + R+ S
Sbjct: 174 LESKE-EKISRNLRSSSRSISPVTEQPQSPKIQPVIPEKKEKSEKKESSMTLRKRSVSPS 232
Query: 187 AEVRQIITRRMSREMAE 237
++ +RM+ E E
Sbjct: 233 SQNTARSPKRMATEPIE 249
>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 58 SKDVTPESKDVTPESKDVTPESKDVTPENKQTPSRRRAKTPTSAEV 195
S++ PE + S+D + +S E+ P+RRR T++ V
Sbjct: 410 SENTKPEDSSIHKHSRDASGDSTKGFAEHMPAPARRRRPQSTASFV 455
>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 634
Score = 26.6 bits (56), Expect = 2.6
Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Frame = +1
Query: 13 ESKDVTRESKDVTLESKDVTPESKDVTPESKDVTPESKDVTPE--NKQTPSRRRAKTPTS 186
ES++ +K + S + + + E+ D + + + N++TP TP+
Sbjct: 530 ESEEEKEHTKGIKFSSDEESLSDMEEENETFDALVDRRKTEQQVSNEKTPQETIRSTPSG 589
Query: 187 AEVRQIITRRMSREMAERGEDS 252
E+ + ++ + R EDS
Sbjct: 590 MEMTFKVEKKKKSKPVNRDEDS 611
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 26.6 bits (56), Expect = 2.6
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 34 ESKDVTLESKDVTPESKDVTPESKDVTPESKDVTPENKQTPSRRRAKTPTSAE 192
+ ++ L+ K + E+ ++ +SK ESKD ENK+T + A+T E
Sbjct: 198 QGTEINLKQK-IEEENDEILEDSK----ESKDENEENKETSTTNVAETDAPEE 245
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 4.6
Identities = 16/76 (21%), Positives = 32/76 (42%)
Frame = +1
Query: 52 LESKDVTPESKDVTPESKDVTPESKDVTPENKQTPSRRRAKTPTSAEVRQIITRRMSREM 231
LES++ + + P +D +++ V PE ++ + R +T+R S
Sbjct: 13 LESENESSLTSRFLPNKRDGGKDNESVIPEKEEPDLNEPVLAVPLPKSRYALTKRSSSSE 72
Query: 232 AERGEDSIIVEENLTP 279
R S ++N+ P
Sbjct: 73 YPRRSASTSAKKNVIP 88
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.8 bits (54), Expect = 4.6
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 55 ESKDVTPESKDVTPESKDVTPESKDVTPENKQTPSRRRAKTPTSAE 192
+SK +S+D TP+S+ T E+ D N ++ SR + P A+
Sbjct: 1416 DSKLREDQSRDRTPQSRSFTNENND----NLRSVSRHTRREPQQAQ 1457
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 25.8 bits (54), Expect = 4.6
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 10 LESKDVTRESKDVTLESKDVTP--ESKDVTPESKDVTPESKDVTPEN 144
L S V ESK ESK + + +P S ++T ESK+V P N
Sbjct: 636 LASSTVASESKPSAPESKPSSGFGNTAGSSPFSFNLTKESKEVPPTN 682
>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 25.4 bits (53), Expect = 6.1
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +1
Query: 13 ESKDVTRESKDVTLESKDVTPESKDVTPESKDVTPESKDVTPENKQTPSRRRAKTPTSAE 192
ESK+V +++ ESK T + KDV S + N + S + T T ++
Sbjct: 84 ESKNVEKDATGNPQESKQEPNLEVQQTEKEKDVDSASAENESINSSSSSSKECSTQTQSK 143
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 6.1
Identities = 13/59 (22%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 19 KDVTRESKDVTL-ESKDVTPESKDVTPESKDVTPESKDVTPENKQTPSRRRAKTPTSAE 192
+ +++ +K V E ++ E + + +++ + E + V PE +TP +R ++ +SA+
Sbjct: 160 EQISKATKKVKQKEEEEYVEEVDEKSLKNESSSDEFEPVVPEQLETPISKRRRSRSSAK 218
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 25.0 bits (52), Expect = 8.0
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 7 WLESKDVTRESKDVTLESKDVT 72
WLESK + + KD + +S+ +T
Sbjct: 805 WLESKTILSDKKDDSEDSRTIT 826
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 25.0 bits (52), Expect = 8.0
Identities = 14/74 (18%), Positives = 34/74 (45%)
Frame = +1
Query: 31 RESKDVTLESKDVTPESKDVTPESKDVTPESKDVTPENKQTPSRRRAKTPTSAEVRQIIT 210
+ + +V L++ ++ + V E + S TP+ K + R+R K+P + Q +
Sbjct: 98 QSTTEVELKTNELAESNSSVAVEGDE---NSYAETPKKKHSLIRKRRKSPLDSSSAQKVL 154
Query: 211 RRMSREMAERGEDS 252
++ E+ + +
Sbjct: 155 KKNKLNTLEQAQQN 168
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.301 0.117 0.298
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,665,274
Number of Sequences: 5004
Number of extensions: 27643
Number of successful extensions: 91
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)
- SilkBase 1999-2023 -