Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_F16
(580 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0630 + 21367620-21367695,21367890-21367976,21368287-213683... 32 0.29
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279... 32 0.38
10_05_0047 + 8524345-8524414,8524687-8524776,8525004-8525306,852... 31 0.88
04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680 28 4.7
12_02_1032 + 25542420-25542573,25543511-25543577,25543816-255439... 28 6.2
05_01_0112 - 757514-758444,758525-758571,759074-759236,759861-76... 28 6.2
11_06_0014 - 19267601-19267831,19268338-19268454,19268733-192688... 27 8.2
10_02_0023 + 4306350-4306908,4308429-4308814,4308917-4308991,430... 27 8.2
08_02_1572 - 27952418-27952727,27952872-27953133,27954018-279541... 27 8.2
08_01_0025 - 184899-185384,185707-185940,187156-187341,188108-18... 27 8.2
04_03_1017 + 21747044-21748051 27 8.2
>12_02_0630 +
21367620-21367695,21367890-21367976,21368287-21368333,
21368413-21368470,21369056-21369166,21369353-21369478,
21370123-21370182,21370966-21371186,21371274-21371460,
21371939-21372063
Length = 365
Score = 32.3 bits (70), Expect = 0.29
Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Frame = +1
Query: 31 RESKDVTLESKDVTPESKDV------TPESKDVTPESKDVTPENKQTPSRRRAKTPTSAE 192
R++ + + K P++K + TPES V P+ + N+Q ++A+ SA
Sbjct: 245 RDNSSLNVAQKSFVPQTKSMDQLLASTPESCPVIPQQVAASVPNRQATKSQKAEVQVSAV 304
Query: 193 VRQIITRRMSREMAERGEDSI 255
++ R S++ ++++
Sbjct: 305 KNEMARSRCSKDAVRHSKNTV 325
>03_05_0640 -
26326832-26327166,26327295-26327529,26327665-26327908,
26328389-26328507,26328860-26329050,26329133-26329220,
26331653-26331715,26331816-26333944,26334084-26334186
Length = 1168
Score = 31.9 bits (69), Expect = 0.38
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 52 LESKDVTPESKDVTPESKDVTPESKDVTPENKQTPSRRRAKTP 180
LE +P ++ +TPE +P ++ TPE + T S RA+ P
Sbjct: 293 LEPASGSPRARVLTPEPATRSPRARVQTPEPEPTASSERARRP 335
>10_05_0047 +
8524345-8524414,8524687-8524776,8525004-8525306,
8525413-8525872,8525962-8526043,8526157-8526351
Length = 399
Score = 30.7 bits (66), Expect = 0.88
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +1
Query: 37 SKDVTLESKDVTPESKDVTPESKDVTPESKDVTPENKQTPSRRR-AKTPTSAEVRQIITR 213
+K+ ++ + T K +T E K V + TP K P+R+ K P E +I R
Sbjct: 79 AKEEEKQATEETRVKKKLTSEKKPVANDEPSTTPTLKLPPNRQGILKRPRQTEGSRITRR 138
Query: 214 RMSREMAERGED 249
+E+ ED
Sbjct: 139 FSGKEIVPDEED 150
>04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680
Length = 628
Score = 28.3 bits (60), Expect = 4.7
Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 6/124 (4%)
Frame = +1
Query: 13 ESKDVTRESKDVTLESKDVTPESKDVTPESKDVTPESKDVTPEN-----KQTPSRRRAKT 177
+ +++ ++KD ++ P ++ P+S +T +++ V N K T
Sbjct: 506 DGTNISEDNKDSKSSTRQTGPVTEQNEPDSAKMTMQTEPVAQRNEPDSAKVTMQTESVAQ 565
Query: 178 PTSAEVRQIITRRMSREMAERG-EDSIIVEENLTPXXXXXXXXXXNADDNESVASESSVT 354
P A+ ++ R + R E I+ LTP N S+ S+SS T
Sbjct: 566 PNEADSAKVTARNVIRNPFESSFSGPSIISGPLTPSGHIPY------SGNISLRSDSSTT 619
Query: 355 SNMS 366
S S
Sbjct: 620 STRS 623
>12_02_1032 +
25542420-25542573,25543511-25543577,25543816-25543918,
25544435-25544505,25544639-25544702,25545260-25545316,
25545435-25545593,25545967-25546035,25546111-25546202,
25546579-25546657,25546923-25547088,25547480-25547604,
25547737-25548078,25548271-25548432,25548520-25548624,
25548766-25548860,25548948-25549044,25549848-25550165,
25550228-25550296
Length = 797
Score = 27.9 bits (59), Expect = 6.2
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = +1
Query: 4 RWLESKDVTRESKDVTLESKDVTPESKDVTPESKDVTPES-KDVTPE-NKQTPSRRRAK- 174
RW E D + TL VTP+SK + S + + ++V+P+ TPS+ ++
Sbjct: 528 RWDEKPDKIEKILTSTLLDGSVTPKSKGASASSDPLASTTWEEVSPKYTLITPSQCKSLW 587
Query: 175 TPTSAEVRQIITRRMSREMAER 240
AE IT+ +S + A +
Sbjct: 588 KQFKAETEFAITQAVSTQQAHK 609
>05_01_0112 -
757514-758444,758525-758571,759074-759236,759861-760366
Length = 548
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 58 SKDVTPESKDVTPESKDVTPESKDVTPENKQTPSRRRAK 174
S D P+ D T + +TPE + E+ PS++R K
Sbjct: 432 SSDKGPD--DETKSAPSITPEDNKIGEESNSAPSKKRRK 468
>11_06_0014 -
19267601-19267831,19268338-19268454,19268733-19268890,
19269501-19269612,19269721-19269908,19270344-19270436,
19270521-19270708,19271635-19271720,19272662-19272811,
19273930-19274065,19274143-19274222,19275546-19275626,
19276114-19276245,19276490-19276610,19277457-19277518,
19277846-19277974,19278514-19278573,19278689-19278772,
19278852-19279532
Length = 962
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 460 LSVIPEVIVEDTTNKDATDIVAEYSSARRLTRNQQALLE 576
L+V+PE +V+D + D A R L + A+LE
Sbjct: 157 LTVLPEEVVQDQSGDTGVDAAARCRFTRELMAHAPAVLE 195
>10_02_0023 +
4306350-4306908,4308429-4308814,4308917-4308991,
4309330-4309539,4309649-4309961,4310035-4310130,
4310220-4310357,4310436-4310536,4310645-4310712,
4310800-4310849,4311790-4311848,4312399-4312530
Length = 728
Score = 27.5 bits (58), Expect = 8.2
Identities = 24/105 (22%), Positives = 36/105 (34%)
Frame = +1
Query: 34 ESKDVTLESKDVTPESKDVTPESKDVTPESKDVTPENKQTPSRRRAKTPTSAEVRQIITR 213
ES V +E+ D P + + V E KDV ++ + P AEV +
Sbjct: 92 ESGPVAMEAGDGEPALEVAITAHEPVEEEPKDVMETGEEAIEPEEDEEPEEAEVEEDEEP 151
Query: 214 RMSREMAERGEDSIIVEENLTPXXXXXXXXXXNADDNESVASESS 348
E ED+ E ADD + +A + S
Sbjct: 152 EELEMEEEEPEDADSEESMEEEAGSEVSEEEAAADDMKEIADKDS 196
>08_02_1572 -
27952418-27952727,27952872-27953133,27954018-27954107,
27955653-27955695
Length = 234
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +1
Query: 4 RWLESKDVTRESKDVTLESKDVTPES-KDVTPESKDVTPESKDVTPENKQTPSRRRAKTP 180
RW + KD+ +KD +S+D E + V E + E+ + P+ P R
Sbjct: 41 RWQKGKDLFWYTKDKKSDSEDALKEEIRRVKEEEEQSMREALGLVPKRSSRPKGNRLDKH 100
Query: 181 TSAEV 195
AE+
Sbjct: 101 EYAEL 105
>08_01_0025 -
184899-185384,185707-185940,187156-187341,188108-188158
Length = 318
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 145 KQTPSRRRAKTPTSAEVRQIITRRMSREMAERGEDSIIVEEN 270
++TP R RAK E+ I + R E G++ + VE N
Sbjct: 220 EETPHRPRAKVEDDLEMGLDILKTSQRRSDELGDEELGVESN 261
>04_03_1017 + 21747044-21748051
Length = 335
Score = 27.5 bits (58), Expect = 8.2
Identities = 27/71 (38%), Positives = 29/71 (40%), Gaps = 10/71 (14%)
Frame = +1
Query: 16 SKDVTRESKDVTLESKDVTPESK-------DVTPESKDVTPESKDVTPENKQTPSRRRAK 174
S D T ES S D +PES D TP S S D TPE +P RR A
Sbjct: 103 SPDYTPESPPRRAASPDYSPESPPRRAASPDYTPASPSRRAASPDYTPE---SPPRRAAS 159
Query: 175 ---TPTSAEVR 198
TP S R
Sbjct: 160 PDYTPASPSRR 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.301 0.117 0.298
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,588,485
Number of Sequences: 37544
Number of extensions: 174347
Number of successful extensions: 388
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)
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