Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F16
         (580 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    25   0.71 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.71 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   0.94 
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    24   0.94 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   6.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.8  

>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 544 F*QRNIQQQYQWRPC 500
           F +R+IQQ+ Q+RPC
Sbjct: 41  FFRRSIQQKIQYRPC 55


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 544 F*QRNIQQQYQWRPC 500
           F +R+IQQ+ Q+RPC
Sbjct: 90  FFRRSIQQKIQYRPC 104


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 112 TPESKDVTPENKQTPSRRRAKTPTSAEVRQI 204
           +P  +   P  K++  RRR +TP    V +I
Sbjct: 393 SPPPRQTPPSRKESGRRRRRRTPRYNSVSKI 423


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 70  TPESKDVTPESKDVTPESKDVTPENKQTPS 159
           +PE   VTPE+K++  +   V P  + T S
Sbjct: 133 SPEWDTVTPEAKNLINQMLTVNPSKRITAS 162


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 516 ISGVLVSCILNYNFRYHRQFWFSRYNRLFTLPALTRF 406
           +S V+   +LN NFR       +R+ R+  +  L RF
Sbjct: 312 LSVVVTIAVLNVNFRSPVTHRMARWVRVVFIQVLPRF 348


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -1

Query: 136 VSRLCFQVSRLCFQVSRLCFQVSRLCFQVSRLCFHVSRLCFQAI 5
           V+ +C+  + +     RLC  V+ + F VS L   V  + + ++
Sbjct: 160 VAEVCYFTAHVTHPRHRLCVFVAGVVFIVSGLLMLVGMVMYISV 203


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = -3

Query: 221 DIRLVMICLTSALVGVFARLLDGVCLF 141
           ++ + ++C  S L+G+F     G+ +F
Sbjct: 416 ELFIAIVCFVSYLIGLFCITEGGMYVF 442


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = -3

Query: 221 DIRLVMICLTSALVGVFARLLDGVCLF 141
           ++ + ++C  S L+G+F     G+ +F
Sbjct: 469 ELFIAIVCFVSYLIGLFCITEGGMYVF 495


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.301    0.117    0.298 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,313
Number of Sequences: 438
Number of extensions: 1956
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.3 bits)