Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F15
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   4.2  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   5.5  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   7.3  
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |...    25   9.6  

>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 88  FFLYLSI*KNWASIFKKMQ*RIY 156
           FFL +SI   W +IF +M  RIY
Sbjct: 744 FFLGISIWTPWRNIFARMPKRIY 766


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 262 FYCQFFFVLNGKMLDYII 209
           +Y  F FV  G+MLDYII
Sbjct: 216 YYMVFEFVDGGQMLDYII 233


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 95   RKNISHKFKQLPVKLCIESDF 33
            R+ +SH+ K+L V   +ESD+
Sbjct: 1266 REKLSHELKELTVYYMVESDY 1286


>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 266

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +1

Query: 190 F*NKFAILYNQAFYHLEQKKIGSRIAYNIMYLRRYYSHLVIVIKSNCDRL 339
           F N+ + +    +Y LE  +  ++IAY ++ L      + I+I   CD L
Sbjct: 90  FGNEISKIPGGRYYSLEVNEDYAKIAYELVKLAGLDEIVTIMIGKACDSL 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,161,045
Number of Sequences: 5004
Number of extensions: 43026
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)