Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F15
         (546 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   2.0  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   3.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   3.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   6.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   8.2  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 137 KCSKEYMNRGRSRGGTASFKINLLY 211
           K SK  +++ R  GGT   K+N +Y
Sbjct: 223 KESKTKLSQWRKDGGTVKKKVNYVY 247


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -1

Query: 327 ITLYNNY*VRIVPPKIHYVICDSTANFFLF*MVKCLI 217
           + +Y N  V  VPP I+   C     +F F    C++
Sbjct: 131 VLIYPNGDVLWVPPAIYQSSCTIDVTYFPFDQQTCIM 167


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 292 YYSHLVIVIKSNCDRL 339
           YY H  I+ + NC+RL
Sbjct: 235 YYMHQQIMARYNCERL 250


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 413 LDLDFSLLEMFVQNKKKYRTL 351
           LDL++ L+E    N+K + TL
Sbjct: 76  LDLEYELVENLQANEKPWSTL 96


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 413 LDLDFSLLEMFVQNKKKYRTL 351
           LDL++ L+E    N+K + TL
Sbjct: 114 LDLEYELVENLQANEKPWSTL 134


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -1

Query: 324 TLYNNY*VRIVPPKIHYVICDSTANFFLF*MVKCLI 217
           T+Y+   V   PP I+   C+    +F F    C++
Sbjct: 134 TIYHQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVL 169


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 461 QNCSWFQEYAKLTE 420
           +NC+ +Q+Y +L E
Sbjct: 166 ENCTGYQQYLRLLE 179


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,285
Number of Sequences: 438
Number of extensions: 3051
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)