Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F14
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    25   4.6  
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    25   4.6  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    25   6.1  

>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 190 IFI*YFTFSFLFLIYKFSY*FRVTLEFTFVNFFYLSLIN 306
           +F+ +FTF   + I  FSY F +  E    +    S++N
Sbjct: 3   LFLYHFTFIVYYFIISFSYAFSIKQEIIVSSHNASSILN 41


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 432 DVTEQENMFQETVNTSSTTVNRY 364
           ++ +QEN FQ   +T+ TTV R+
Sbjct: 44  EIEKQENCFQYNEHTAPTTVARF 66


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 443 GFLTMSQNRKICFKKRLI 390
           GFLT SQ RK+ F+  LI
Sbjct: 631 GFLTDSQGRKVDFRSTLI 648


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,667,969
Number of Sequences: 5004
Number of extensions: 28783
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)