Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F14
         (488 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442...    29   1.5  
05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722     29   2.0  
05_05_0029 + 21694448-21694567,21694666-21695117,21695214-216955...    29   2.0  

>02_02_0421 -
           10042184-10042197,10042442-10042822,10044158-10044261,
           10044634-10044734,10044806-10045147,10045981-10046158,
           10047696-10047776,10049190-10049449
          Length = 486

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -1

Query: 149 RIDKKWRPIGIQFHLF*SKTFIKNLSLGVFFLIYCK 42
           R+ K W  + +++ LF    +I++LSL +  L+YC+
Sbjct: 82  RLVKSWNGVMLKYVLFKRVGYIESLSLMIRMLLYCE 117


>05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722
          Length = 740

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 443 GFLTMSQNRKICFKKRLIHPVPPLIGMIVKLAPKFH 336
           G L   Q  K+  +++L  P PP + M+   AP++H
Sbjct: 531 GVLEALQRAKMSLREKLSKPSPPSLEMLALPAPEYH 566


>05_05_0029 +
           21694448-21694567,21694666-21695117,21695214-21695529,
           21695863-21697122
          Length = 715

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 443 GFLTMSQNRKICFKKRLIHPVPPLIGMIVKLAPKFH 336
           G L   Q  K+  +++L  P PP + M+   AP++H
Sbjct: 506 GVLEALQRAKMSLREKLSKPSPPSLEMLALPAPEYH 541


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,686,428
Number of Sequences: 37544
Number of extensions: 150344
Number of successful extensions: 269
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)