Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_F14
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   3.1  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   3.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   4.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   5.3  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   7.0  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   9.3  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 202 YFTFSFLFLIYKFSY*FRVTLEFTFVNFF 288
           Y T    FL+  F Y     LEF  V++F
Sbjct: 303 YATALDWFLLMSFGYCIATLLEFAGVHYF 331


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
          monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 26 MINYFLYNRLKKKHL 70
          +I YF+Y R+ ++HL
Sbjct: 23 LILYFIYFRISRRHL 37


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 95  YFKKGEIVFLSAAIFCQYAMV 157
           Y K  EI FL   IF   AMV
Sbjct: 290 YIKASEIWFLGCTIFLFAAMV 310


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 220 LFLIYKFSY*FRVTLEFTFVNFFY 291
           ++L+  F + F   LE+  VN+ Y
Sbjct: 306 IYLVMCFVFVFAALLEYAAVNYTY 329


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 20  NYMINYFLYNRLKKKHLGIDF 82
           NY  NY+  N  KK +  I++
Sbjct: 312 NYSNNYYNNNNYKKLYYNINY 332


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +1

Query: 352 NFTIIPINGGTGCINRFLKHIFLFCD 429
           N  ++  NGG   +    KH+ +F D
Sbjct: 100 NGNVVARNGGVPQLGNLTKHLQVFRD 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,119
Number of Sequences: 438
Number of extensions: 1874
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)