Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_F13
(527 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC013981-1|AAH13981.1| 932|Homo sapiens RNA binding motif prote... 54 2e-07
BC012787-1|AAH12787.1| 932|Homo sapiens RNA binding motif prote... 54 2e-07
AL109827-26|CAO72113.1| 134|Homo sapiens RNA binding motif prot... 54 2e-07
AL109827-25|CAO72112.1| 143|Homo sapiens RNA binding motif prot... 54 2e-07
AL109827-24|CAI20134.1| 291|Homo sapiens RNA binding motif prot... 54 2e-07
AL109827-23|CAB87611.1| 932|Homo sapiens RNA binding motif prot... 54 2e-07
AJ289772-1|CAC20441.1| 932|Homo sapiens RNA binding motif prote... 54 2e-07
AF393214-1|AAM73682.1| 932|Homo sapiens swan protein. 54 2e-07
AF345335-1|AAL83755.1| 932|Homo sapiens SWAN protein. 54 2e-07
AF345332-1|AAL83752.1| 932|Homo sapiens SWAN protein. 54 2e-07
AB018308-1|BAA34485.2| 952|Homo sapiens KIAA0765 protein protein. 54 2e-07
BC039260-1|AAH39260.1| 765|Homo sapiens RBM12B protein protein. 50 5e-06
BC108285-1|AAI08286.1| 543|Homo sapiens NES protein protein. 30 5.8
AL671511-1|CAI18059.2| 563|Homo sapiens chromosome 6 open readi... 30 5.8
AL662796-1|CAI18263.1| 563|Homo sapiens chromosome 6 open readi... 30 5.8
AL590666-3|CAI16338.1| 1621|Homo sapiens nestin protein. 30 5.8
AB073350-1|BAE45713.1| 1018|Homo sapiens nestin protein. 30 5.8
X65964-1|CAA46780.1| 1618|Homo sapiens nestin protein. 29 7.6
AL671511-2|CAI18060.2| 562|Homo sapiens chromosome 6 open readi... 29 7.6
AL662796-2|CAI18262.1| 562|Homo sapiens chromosome 6 open readi... 29 7.6
AK025494-1|BAB15153.1| 430|Homo sapiens protein ( Homo sapiens ... 29 7.6
>BC013981-1|AAH13981.1| 932|Homo sapiens RNA binding motif protein
12 protein.
Length = 932
Score = 54.4 bits (125), Expect = 2e-07
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = +2
Query: 8 VHIVGGELGDAFIAFSTDEDARQAMMLDGGKNKG 109
VHIVGGELG+AFI F+TDEDAR MM GG KG
Sbjct: 33 VHIVGGELGEAFIVFATDEDARLGMMRTGGTIKG 66
>BC012787-1|AAH12787.1| 932|Homo sapiens RNA binding motif protein
12 protein.
Length = 932
Score = 54.4 bits (125), Expect = 2e-07
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = +2
Query: 8 VHIVGGELGDAFIAFSTDEDARQAMMLDGGKNKG 109
VHIVGGELG+AFI F+TDEDAR MM GG KG
Sbjct: 33 VHIVGGELGEAFIVFATDEDARLGMMRTGGTIKG 66
>AL109827-26|CAO72113.1| 134|Homo sapiens RNA binding motif protein
12 protein.
Length = 134
Score = 54.4 bits (125), Expect = 2e-07
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = +2
Query: 8 VHIVGGELGDAFIAFSTDEDARQAMMLDGGKNKG 109
VHIVGGELG+AFI F+TDEDAR MM GG KG
Sbjct: 33 VHIVGGELGEAFIVFATDEDARLGMMRTGGTIKG 66
>AL109827-25|CAO72112.1| 143|Homo sapiens RNA binding motif protein
12 protein.
Length = 143
Score = 54.4 bits (125), Expect = 2e-07
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = +2
Query: 8 VHIVGGELGDAFIAFSTDEDARQAMMLDGGKNKG 109
VHIVGGELG+AFI F+TDEDAR MM GG KG
Sbjct: 33 VHIVGGELGEAFIVFATDEDARLGMMRTGGTIKG 66
>AL109827-24|CAI20134.1| 291|Homo sapiens RNA binding motif protein
12 protein.
Length = 291
Score = 54.4 bits (125), Expect = 2e-07
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = +2
Query: 8 VHIVGGELGDAFIAFSTDEDARQAMMLDGGKNKG 109
VHIVGGELG+AFI F+TDEDAR MM GG KG
Sbjct: 33 VHIVGGELGEAFIVFATDEDARLGMMRTGGTIKG 66
>AL109827-23|CAB87611.1| 932|Homo sapiens RNA binding motif protein
12 protein.
Length = 932
Score = 54.4 bits (125), Expect = 2e-07
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = +2
Query: 8 VHIVGGELGDAFIAFSTDEDARQAMMLDGGKNKG 109
VHIVGGELG+AFI F+TDEDAR MM GG KG
Sbjct: 33 VHIVGGELGEAFIVFATDEDARLGMMRTGGTIKG 66
>AJ289772-1|CAC20441.1| 932|Homo sapiens RNA binding motif protein
12 protein.
Length = 932
Score = 54.4 bits (125), Expect = 2e-07
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = +2
Query: 8 VHIVGGELGDAFIAFSTDEDARQAMMLDGGKNKG 109
VHIVGGELG+AFI F+TDEDAR MM GG KG
Sbjct: 33 VHIVGGELGEAFIVFATDEDARLGMMRTGGTIKG 66
>AF393214-1|AAM73682.1| 932|Homo sapiens swan protein.
Length = 932
Score = 54.4 bits (125), Expect = 2e-07
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = +2
Query: 8 VHIVGGELGDAFIAFSTDEDARQAMMLDGGKNKG 109
VHIVGGELG+AFI F+TDEDAR MM GG KG
Sbjct: 33 VHIVGGELGEAFIVFATDEDARLGMMRTGGTIKG 66
>AF345335-1|AAL83755.1| 932|Homo sapiens SWAN protein.
Length = 932
Score = 54.4 bits (125), Expect = 2e-07
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = +2
Query: 8 VHIVGGELGDAFIAFSTDEDARQAMMLDGGKNKG 109
VHIVGGELG+AFI F+TDEDAR MM GG KG
Sbjct: 33 VHIVGGELGEAFIVFATDEDARLGMMRTGGTIKG 66
>AF345332-1|AAL83752.1| 932|Homo sapiens SWAN protein.
Length = 932
Score = 54.4 bits (125), Expect = 2e-07
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = +2
Query: 8 VHIVGGELGDAFIAFSTDEDARQAMMLDGGKNKG 109
VHIVGGELG+AFI F+TDEDAR MM GG KG
Sbjct: 33 VHIVGGELGEAFIVFATDEDARLGMMRTGGTIKG 66
>AB018308-1|BAA34485.2| 952|Homo sapiens KIAA0765 protein protein.
Length = 952
Score = 54.4 bits (125), Expect = 2e-07
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = +2
Query: 8 VHIVGGELGDAFIAFSTDEDARQAMMLDGGKNKG 109
VHIVGGELG+AFI F+TDEDAR MM GG KG
Sbjct: 53 VHIVGGELGEAFIVFATDEDARLGMMRTGGTIKG 86
>BC039260-1|AAH39260.1| 765|Homo sapiens RBM12B protein protein.
Length = 765
Score = 50.0 bits (114), Expect = 5e-06
Identities = 22/36 (61%), Positives = 28/36 (77%)
Frame = +2
Query: 8 VHIVGGELGDAFIAFSTDEDARQAMMLDGGKNKGDS 115
VHI+GGE+G+AFI F+TDEDAR+A+ GG K S
Sbjct: 33 VHIIGGEIGEAFIIFATDEDARRAISRSGGFIKDSS 68
>BC108285-1|AAI08286.1| 543|Homo sapiens NES protein protein.
Length = 543
Score = 29.9 bits (64), Expect = 5.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 304 TALGSNTLSGYGIPGLGNPQEIPQSAVIEPP 396
+A G+ G G+ GLG+P + + V+EPP
Sbjct: 15 SAAGAEPGPGQGVGGLGDPGHLTREEVMEPP 45
>AL671511-1|CAI18059.2| 563|Homo sapiens chromosome 6 open reading
frame 10 protein.
Length = 563
Score = 29.9 bits (64), Expect = 5.8
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 340 IPGLGNPQEIPQSAVIEPPGPLISPSASNS 429
IPG P ++ Q +++ PGP++ SN+
Sbjct: 143 IPGATGPIKLSQKTIVQTPGPIVQYPGSNA 172
>AL662796-1|CAI18263.1| 563|Homo sapiens chromosome 6 open reading
frame 10 protein.
Length = 563
Score = 29.9 bits (64), Expect = 5.8
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 340 IPGLGNPQEIPQSAVIEPPGPLISPSASNS 429
IPG P ++ Q +++ PGP++ SN+
Sbjct: 143 IPGATGPIKLSQKTIVQTPGPIVQYPGSNA 172
>AL590666-3|CAI16338.1| 1621|Homo sapiens nestin protein.
Length = 1621
Score = 29.9 bits (64), Expect = 5.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 304 TALGSNTLSGYGIPGLGNPQEIPQSAVIEPP 396
+A G+ G G+ GLG+P + + V+EPP
Sbjct: 1093 SAAGAEPGPGQGVGGLGDPGHLTREEVMEPP 1123
>AB073350-1|BAE45713.1| 1018|Homo sapiens nestin protein.
Length = 1018
Score = 29.9 bits (64), Expect = 5.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 304 TALGSNTLSGYGIPGLGNPQEIPQSAVIEPP 396
+A G+ G G+ GLG+P + + V+EPP
Sbjct: 490 SAAGAEPGPGQGVGGLGDPGHLTREEVMEPP 520
>X65964-1|CAA46780.1| 1618|Homo sapiens nestin protein.
Length = 1618
Score = 29.5 bits (63), Expect = 7.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 304 TALGSNTLSGYGIPGLGNPQEIPQSAVIEPP 396
+A G+ G G+ GLG+P + + V+EPP
Sbjct: 1093 SAAGAEPGLGQGVGGLGDPGHLTREEVMEPP 1123
>AL671511-2|CAI18060.2| 562|Homo sapiens chromosome 6 open reading
frame 10 protein.
Length = 562
Score = 29.5 bits (63), Expect = 7.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 340 IPGLGNPQEIPQSAVIEPPGPLISPSASN 426
IPG P ++ Q +++ PGP++ SN
Sbjct: 127 IPGATGPIKLSQKTIVQTPGPIVQYPGSN 155
>AL662796-2|CAI18262.1| 562|Homo sapiens chromosome 6 open reading
frame 10 protein.
Length = 562
Score = 29.5 bits (63), Expect = 7.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 340 IPGLGNPQEIPQSAVIEPPGPLISPSASN 426
IPG P ++ Q +++ PGP++ SN
Sbjct: 127 IPGATGPIKLSQKTIVQTPGPIVQYPGSN 155
>AK025494-1|BAB15153.1| 430|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21841 fis, clone HEP01831. ).
Length = 430
Score = 29.5 bits (63), Expect = 7.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 304 TALGSNTLSGYGIPGLGNPQEIPQSAVIEPP 396
+A G+ G G+ GLG+P + + V+EPP
Sbjct: 125 SAAGAEPGLGQGVGGLGDPGHLTREEVMEPP 155
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,112,663
Number of Sequences: 237096
Number of extensions: 1141990
Number of successful extensions: 2625
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2625
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5103531180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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